scholarly journals Infraspecific morphological and genetic variations of Ficus carica L. from Iran

Biologija ◽  
2019 ◽  
Vol 65 (3) ◽  
Author(s):  
Mohammad Reza Zolfaghari ◽  
Fahimeh Salimpour ◽  
Fariba Sharifnia ◽  
Maryam Peyvandi ◽  
Sayeh Jafari Marandi
Keyword(s):  
Genetic Diversity ◽  
Morphological Traits ◽  
Morphological Characteristics ◽  
Ecological Factors ◽  
Ficus Carica ◽  
Upgma Tree ◽  
Genetic Diversity And Structure ◽  
Morphological Variables ◽  
Cultivated Populations ◽  
Different Parts

Ficus carica L. (Moraceae) is one of the most important crop plants widely cultivated in different parts of the world. Several wild or cultivated populations of it grow in various regions of Iran. In the current research, we evaluated morphological and molecular SSR methods in order to investigate infraspecific variations in this species and introduce possible phenotypes/genotypes among its populations. For this, 14 populations were selected from different parts of the country. We evaluated 27 qualitative and quantitative morphological traits of both reproductive and vegetative organs. The ANOVA test revealed significant variations for most of the quantitative variables; moreover, qualitative features differed among populations. Significant correlations were found between some morphological characteristics with ecological factors of habitats. According to the UPGMA tree, four morphotypes existed among these populations. CA-joined plot revealed that each group was identified by some morphological variables. In addition, parameters of genetic diversity varied among the studied populations, while the AMOVA test showed significant variations, most of which belonged to the variations within the population. According to the UPGMA tree, MDS and PCoA plots, the studied populations were divided into four distinct genotypes. In addition, the UPGMA tree based on Nei genetic diversity and Structure analyses confirmed these groups. Three groups were monotypic and the fourth was composed of eleven populations. Patterns of population clustering based on the morphological traits were not similar to those of SSR data. Therefore we concluded that environmental factors had strong effects on the population’s phenotype and genotypes were not recognized by their phenotypes.

scholarly journals Infraspecific morphological variations of Salvia limbata in Iran

2019 ◽  
Vol 5 (1) ◽  
pp. 113-121 ◽  
Author(s):  
S.M. Talebi ◽  
P. Yadegari ◽  
S. Behzadpour ◽  
A. V. Matsyura
Keyword(s):  
Natural Selection ◽  
Morphological Traits ◽  
Morphological Difference ◽  
Morphological Characteristics ◽  
Population Data ◽  
Morphological Variations ◽  
Upgma Tree ◽  
Diverse Area ◽  
Different Populations ◽  
Different Parts

Salvia limbata is an aromatic herb of Lamiaceae, which distributed in different parts of Iran. Studies have revealed that this species has several benefit compounds for human health. In this study, we investigated infra‒specific morphological difference in this species. In total, 21 inflorescence morphological features were evaluated in eight populations; ten individuals were evaluated per each population. Data were analysed using SPSS and MVSP softwares. Morphological traits highly differed among the studied populations and ANOVA test revealed significant differences among most of them. According to UPGMA tree, PCA and PCO plots of morphological characteristics, we reported four distinct phenotypes among the studied populations. CA. Joined plot revealed each of these group were characterized by special traits, which were useful in identification of them. Two phenotypes were monotypic, while the rest were composed of two to four populations. This species has a relative large geographical distribution, the distribution of its populations in diverse area will prevent the focus of natural selection in a given direct. Therefore different phenotypes were found in its different populations.

scholarly journals Analysis of genetic diversity of Ficus carica L. (Moraceae) collection using simple sequence repeat (SSR) markers

2019 ◽  
Vol 18 (4) ◽  
pp. 93-109
Author(s):  
Ilaria Marcotuli ◽  
Andrea Mazzeo ◽  
Domenica Nigro ◽  
Stefania Lucia Giove ◽  
Angelica Giancaspro ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ficus Carica ◽  
Accurate Information ◽  
Main Crop ◽  
Polymorphic Pattern ◽  
Genetic Diversity And Structure ◽  
The Mean ◽  
High Level ◽  
Simple Sequence ◽  
Modern Technologies

Modern technologies and accurate information on genetic diversity and structure are contributing to improve the plant breeding, in particular for all the minor species with a lack of data. Genetic diversity of 139 different Ficus carica L. genotypes collected from Italy and Croatia, and divided into two subgroups: uniferous (only main crop) and biferous (breba and main crop), was investigated using 49 microsatellite markers. A total of 70 alleles were generated, of which 64 (91.4%) showed a polymorphic pattern indicating high level of genetic diversity within the studied collection. The mean heterozygosity over the 64 single locus microsatellites was 0.33 and the expected and observed averaged variance were 16.50 and 184.08, respectively. The 139 fig genotypes formed two clusters in the PCoA analysis, suggesting a division between Italian and Croatian genotypes. Moreover, the fig accessions could be divided into two main clusters based on the STRUCTURE analysis according to the biological type, uniferous or biferous, with partly overlapping varieties. In conclusion, our results demonstrated that molecular markers were able to discriminate among genotypes and useful for the authentication of fig tree varieties (homonymies and synonymies).

scholarly journals Infra-specific morphological diversity in Phlomis olivieri (Labiatae)

2016 ◽  
Vol 22 ◽  
pp. 59-67 ◽  
Author(s):  
Seyed Mehdi Talebi
Keyword(s):  
Morphological Traits ◽  
Ecological Factors ◽  
Morphological Diversity ◽  
Morphological Characters ◽  
Reproductive Organs ◽  
Morphological Features ◽  
Variance Test ◽  
Sample Test ◽  
Different Populations ◽  
Different Parts

Context: Compare the effect of different ecological conditions on phenotypical traits of Phlomis olivieri.Objective: To observe morphological variation between and within different populations of Phlomis olivieri Benth.Materials and Methods: Morphological characters of eleven populations of Phlomis olivieri were investigated in the both levels: between and within populations. Samples were collected from different parts of Iran and from each population, 3 to 4 samples were elected randomly and sixteen quantitative and qualitative morphological traits from the both vegetative and reproductive organs were examined.Results: Analysis of variance test as well as one-sample test confirmed significant variations for quantitative morphological traits. Morphological features varied between populations, consequently populations were separated from each other in the UPGMA tree and also PCO and PCA plots, among these, populations K, A, D and B placed far from others. Some degrees of polymorphism in morphological traits occurred within populations and individuals of each stand separated from others.Conclusion: This study showed that ecological factors had strong effect on morphological features of different populations of same plant species. This phenomenon was called phenotypic plasticity which created infraspecific variations at both levels interpopulation and intrapopulation or morphological polymorphism among populations.J. bio-sci. 22: 59-67, 2014

Mediterranean basin Ficus carica L.: from genetic diversity and structure to authentication of a Protected Designation of Origin cultivar using microsatellite markers

Trees ◽  
2015 ◽  
Vol 29 (6) ◽  
pp. 1959-1971 ◽  
Author(s):  
Ioannis Ganopoulos ◽  
Aliki Xanthopoulou ◽  
Athanasios Molassiotis ◽  
Evangelos Karagiannis ◽  
Theodoros Moysiadis ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Mediterranean Basin ◽  
Ficus Carica ◽  
Protected Designation Of Origin ◽  
Genetic Diversity And Structure

scholarly journals Diversity of Morphological Traits and Glucosinolate Composition in Backcross Progenies of Brassica Rapa L. × Eruca Vesicaria (L.) Cav. Hybrids

2021 ◽  
Author(s):  
Aiko Kaminishi ◽  
Fumika Miyohashi ◽  
Nobuhiro Kita
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Brassica Rapa ◽  
Morphological Traits ◽  
Leaf Shape ◽  
Morphological Characteristics ◽  
Regeneration Potential ◽  
Wide Range

Abstract Breeding at both interspecific and intergeneric levels is an effective method for expanding genetic variation of cruciferous crops; however, few commercially accepted varieties have been released because of difficulties in generating fertile progenies. We employed backcross strategy to introduce Eruca vesicaria-specific characteristics into Brassica rapa and successfully obtained four BC1F1 lines that showed a wide range of diversity of morphological traits and glucosinolate (GSL) composition. Thus, leaf shape, anthocyanin coloration, glucoraphanin content, and red petal veins were found to be inherited mainly from E. vesicaria, though most of the morphological characteristics and GSL composition were inherited from intergeneric F1 plants. Since all BC1F1 lines showed post-fertilization barriers, backcrossing with B. rapa was performed and BC2F1 progenies were successfully obtained, which showed diverse morphological characteristics and GSL composition as well as higher regeneration potential. These results suggest that widening of genetic diversity of B. rapa can be achieved through successive reciprocal backcrossing of B. rapa × E. vesicaria hybrids with B. rapa.

scholarly journals ISSR Analysis of Genetic Diversity and Structure of Plum Varieties Cultivated in Southern China

Biology ◽  
2018 ◽  
Vol 8 (1) ◽  
pp. 2 ◽  
Author(s):  
Weifeng Wu ◽  
Faxing Chen ◽  
Kaiwun Yeh ◽  
Jianjun Chen
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Relationship ◽  
Phylogenetic Trees ◽  
Southern China ◽  
Morphological Characteristics ◽  
Relationship Analysis ◽  
Genetic Diversity And Structure ◽  
Plum Varieties ◽  
Index Value

Plums (Prunus spp.) are important deciduous fruit crops in the world. China is a major producer of P. salicina Lindl., but the genetic relationship of Chinese plums in key production regions remain unclear. In this study, 14 University of British Columbia (UBC) inter simple sequence repeats (ISSR) primers were used to analyze 33 plum varieties cultivated in Fujian Province to determine their genetic diversity and population structure. A total of 146 bands were generated, of which 130 were polymorphic. Mean percentage of polymorphic bands was 89.04%, Shannon’s information index value was 0.38, and the Nei’s genetic index value was 0.24. Using unrooted trees (Neighbor-Joining method), 33 varieties were classified into four groups. Split graph separated them into two major groups, each with two subgroups. The two phylogenetic trees indicate that environmental or natural selection pressure is an important factor influencing their genetic relationship. Analysis of population structure revealed that they have frequent genetic exchanges among closed subpopulations; thus, genetic variation mainly occurs within the population. Additionally, based on the phylogenetic analysis and unique morphological characteristics of fruits, we propose that the Chinese landrace Nai could contribute significantly to development of the famous variety Wickson.

scholarly journals Analysis of nutlet morphological characteristics of some Iranian Ajuga L. taxa

2019 ◽  
Vol 20 (10) ◽  
Author(s):  
Sayed Mehdi Talebi ◽  
RAHELEH TABARIPOUR ◽  
MAJID ESKANDARI
Keyword(s):  
Morphological Characteristics ◽  
Pca Analysis ◽  
Flora Of Iran ◽  
Species Relationship ◽  
Upgma Dendrogram ◽  
Infraspecific Taxa ◽  
Quantitative Characteristics ◽  
Morphological Variables ◽  
Spss Software ◽  
Different Parts

Abstract. Talebi SM, Tabaripour R, Eskandari M. 2019. Analysis of nutlet morphological characteristics of some Iranian Ajuga L. taxa. Biodiversitas 20: 2833-2840. Ajuga is one of the problematic Lamiaceae genera, which naturally grows in different parts of Iran. There are many discussions about infrageneric and infraspecific classifications of the genus and several synonyms were definite for its taxa. In the current study, we evaluated nutlet morphological characteristics from six Iranian taxa of the genus using Scanning Electron Microscopy (SEM) and Light microscopy (LM). In total, thirteen (four qualitative and nine quantitative) nutlet morphological variables were investigated, and the obtained data were analyzed using MVSP and SPSS software. Quantitative nutlet features varied among the studied taxa and ANOVA test revealed significant variations (P <0.01) for most of them. Moreover, PCA analysis showed some characteristics made more than 60% of variations. Some quantitative characteristics like nutlet and ventral sculpturing shapes were nearly stable among the taxa. But dorsal sculpturing shape and existence of exocarp cell indumentum highly varied among the taxa and could be used as distinguishing traits for identification of taxa. The studied taxa were divided into four groups in UPGMA dendrogram and also PCA and PCO plots of the nutlet features. CA. Joined plot revealed that each group had specific nutlet characteristic (s). Taxa arrangements were not similar to those have been definite for them in Flora Iranica and Flora of Iran. Furthermore, some infraspecific taxa must be redefinite. It is advised to use complementary molecular studies to better clearing species relationship, taxa position and rank in the genus.

PROFILING OF GUAVA GENOTYPES GROWN IN VIDARBHA CONDITIONS ON THE BASIS OF MORPHOLOGICAL TRAITS

2017 ◽  
Vol 23 (1) ◽  
Author(s):  
R.A. PATIL ◽  
S.G. BHARAD ◽  
S.N. SAWANT
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Morphological Traits ◽  
Considerable Extent ◽  
Fruit Traits ◽  
Breeding Programmes ◽  
Tree Leaf ◽  
Qualitative Characteristics ◽  
Intrapopulation Diversity

Assessment of genetic diversity in the available germplasm is the prerequisite for development of improved genotypes through planned breeding programmes. In the view of this Forty-eight genotypes of seedling origin guava along with 1 check (L-49/Sardar) collected and conserved at germplasm block, Main Garden, Department of Horticulture, Dr. P. D. A. University, Akola were evaluated for genetic variability and diversity based on the qualitative characteristics. The genotypes were evaluated for sixteen morphological traitsviz. tree, leaf, floral and fruit traits. Results Show considerable extent of variability amongst the 49 genotypes in each traits. A sizeable amount of intrapopulation diversity recorded can be used to identify diverse parents which can be utilized in hybridization programmes.

scholarly journals Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis

2021 ◽  
Vol 20 (1) ◽  
Author(s):  
Fehintola V. Ajogbasile ◽  
Adeyemi T. Kayode ◽  
Paul E. Oluniyi ◽  
Kazeem O. Akano ◽  
Jessica N. Uwanibe ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Plasmodium Falciparum ◽  
Population Structure ◽  
Microsatellite Loci ◽  
Control Strategies ◽  
Population Diversity ◽  
Parasite Population ◽  
Nested Polymerase Chain Reaction ◽  
Public Health Burden ◽  
Genetic Diversity And Structure

Abstract Background Malaria remains a public health burden especially in Nigeria. To develop new malaria control and elimination strategies or refine existing ones, understanding parasite population diversity and transmission patterns is crucial. Methods In this study, characterization of the parasite diversity and structure of Plasmodium falciparum isolates from 633 dried blood spot samples in Nigeria was carried out using 12 microsatellite loci of P. falciparum. These microsatellite loci were amplified via semi-nested polymerase chain reaction (PCR) and fragments were analysed using population genetic tools. Results Estimates of parasite genetic diversity, such as mean number of different alleles (13.52), effective alleles (7.13), allelic richness (11.15) and expected heterozygosity (0.804), were high. Overall linkage disequilibrium was weak (0.006, P < 0.001). Parasite population structure was low (Fst: 0.008–0.105, AMOVA: 0.039). Conclusion The high level of parasite genetic diversity and low population structuring in this study suggests that parasite populations circulating in Nigeria are homogenous. However, higher resolution methods, such as the 24 SNP barcode and whole genome sequencing, may capture more specific parasite genetic signatures circulating in the country. The results obtained can be used as a baseline for parasite genetic diversity and structure, aiding in the formulation of appropriate therapeutic and control strategies in Nigeria.

Assessment of genetic variability amongst cultivated populations of Khasi mandarin (Citrus reticulata Blanco) detected by ISSR

2021 ◽  
pp. 1-11
Author(s):  
Karishma Kashyap ◽  
Rasika M. Bhagwat ◽  
Sofia Banu
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Inter Simple Sequence Repeat ◽  
Northeast India ◽  
Issr Markers ◽  
Citrus Reticulata ◽  
Brahmaputra Valley ◽  
Indian Food ◽  
Cultivated Populations ◽  
High Level

Abstract Khasi mandarin (Citrus reticulata Blanco) is a commercial mandarin variety grown in northeast India and one of the 175 Indian food items included in the global first food atlas. The cultivated plantations of Khasi mandarin grown prominently in the lower Brahmaputra valley of Assam, northeast India, have been genetically eroded. The lack in the efforts for conservation of genetic variability in this mandarin variety prompted diversity analysis of Khasi mandarin germplasm across the region. Thus, the study aimed to investigate genetic diversity and partitioning of the genetic variations within and among 92 populations of Khasi mandarin collected from 10 cultivated sites in Kamrup and Kamrup (M) districts of Assam, India, using Inter-Simple Sequence Repeat (ISSR) markers. The amplification of genomic DNA with 17 ISSR primers yielded 216 scorable DNA amplicons of which 177 (81.94%) were polymorphic. The average polymorphism information content was 0.39 per primer. The total genetic diversity (HT = 0.28 ± 0.03) was close to the diversity within the population (HS = 0.20 ± 0.01). A high mean coefficient of gene differentiation (GST = 0.29) reflected a high level of gene flow (Nm = 1.22), indicating high genetic differentiation among the populations. Analysis of Molecular Variance (AMOVA) showed 78% of intra-population differentiation, 21% among the population and 1% among the districts. The obtained results indicate the existence of a high level of genetic diversity in the cultivated Khasi mandarin populations, indicating the need for preservation of each existing population to revive the dying out orchards in northeast India.

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