scholarly journals Understanding of Rice Domestication Process based on DNA Changes in Domestication-trait Genes.

2017 ◽  
Vol 112 (1) ◽  
pp. 15-21
Author(s):  
Takeshi IZAWA
The Holocene ◽  
2021 ◽  
pp. 095968362110190
Author(s):  
Xiujia Huan ◽  
Houyuan Lu ◽  
Leping Jiang ◽  
Xinxin Zuo ◽  
Keyang He ◽  
...  

Rice is among the world’s most important and ancient domesticated crops. However, the spatial and temporal pattern of the early rice domestication process remains unclear due to the lack of systematic study of wild/domesticated rice remains and corresponding dates during the early Holocene. Here, we collected 248 samples from five typical Shangshan cultural sites in the lower Yangtze region where is the most likely origin place of rice for phytolith analysis. The results showed the following. (1) Rice bulliform phytoliths from the five sites all present domestication traits, suggesting that the rice domestication process had begun across the region by the early stage of the Holocene. (2) The relative domestication rates reflected by the rice bulliform phytoliths were different between sites, the sites with higher domestication rates were distributed closer to the mainstream river. (3) The rice domestication process revealed by bulliform phytoliths can be divided into three periods during the early Holocene: from 10 to 9 ka, rice domestication began and stayed at a low level under 35%; from 9 to 8.5 ka, rice domestication level increased to 50%; and from 8.5 to 8 ka, rice domestication level was in a fluctuating state. (4) By 9 ka BP, rice double-peaked phytoliths from glume cells are present in most of the studied sites, which imply the presence of crop dehusking processing. This study reconstructed the spatial and temporal patterns of rice domestication during the early Holocene, which will improve our knowledge of early crop domestication and enhance our understanding of changes in rice status.


Human Ecology ◽  
2021 ◽  
Author(s):  
Mietje Germonpré ◽  
Martine Van den Broeck ◽  
Martina Lázničková-Galetová ◽  
Mikhail V. Sablin ◽  
Hervé Bocherens

Author(s):  
C. Montagnon ◽  
A. Mahyoub ◽  
W. Solano ◽  
F. Sheibani

AbstractWhilst it is established that almost all cultivated coffee (Coffea arabica L.) varieties originated in Yemen after some coffee seeds were introduced into Yemen from neighboring Ethiopia, the actual coffee genetic diversity in Yemen and its significance to the coffee world had never been explored. We observed five genetic clusters. The first cluster, which we named the Ethiopian-Only (EO) cluster, was made up exclusively of the Ethiopian accessions. This cluster was clearly separated from the Yemen and cultivated varieties clusters, hence confirming the genetic distance between wild Ethiopian accessions and coffee cultivated varieties around the world. The second cluster, which we named the SL-17 cluster, was a small cluster of cultivated worldwide varieties and included no Yemen samples. Two other clusters were made up of worldwide varieties and Yemen samples. We named these the Yemen Typica-Bourbon cluster and the Yemen SL-34 cluster. Finally, we observed one cluster that was unique to Yemen and was not related to any known cultivated varieties and not even to any known Ethiopian accession: we name this cluster the New-Yemen cluster. We discuss the consequences of these findings and their potential to pave the way for further comprehensive genetic improvement projects for the identification of major resilience/adaptation and cup quality genes that have been shaped through the domestication process of C. arabica.


2021 ◽  
Vol 13 (16) ◽  
pp. 8785
Author(s):  
Silvia Medda ◽  
Maurizio Mulas

Interest in myrtle (Myrtus communis L.) by food, cosmetics, and pharmaceutic industries generated the integration of biomasses harvested from wild populations as raw materials with yields of cultivated orchards. The domestication process is reviewed considering shoot, fruit, and leaf biometric characters of selections obtained in three steps of the program. The first step started in Sardinia (Italy) in 1995 by the analysis of wild germplasm variability. Seventy accessions were the object of the first studied population of mother plants. Agamic propagation tests, as well quality evaluations of fruit and leaves, were integrated into the first step. In the second step, a field of comparison of forty-two agamically propagated cultivars functional to biomass production and to food uses was planted and evaluated for phenotypic characters. In the third step, a new population of twenty selections was obtained by open cross-pollination of some of the cultivars and further phenotypic selection in seedling population. In this review, the three populations are compared for biometric shoot, leaves and fruit characters, in order to verify the pressure of domestication process on these traits. Wild populations showed high variability only partially used during the first step, while the hybridization may create new variability for use in the genetic improvement of myrtle.


2010 ◽  
Vol 19 (16) ◽  
pp. 3243-3245 ◽  
Author(s):  
AMY LAWTON-RAUH ◽  
NILDA BURGOS

Heredity ◽  
2016 ◽  
Vol 117 (2) ◽  
pp. 84-93 ◽  
Author(s):  
N Muñoz ◽  
X Qi ◽  
M-W Li ◽  
M Xie ◽  
Y Gao ◽  
...  

2018 ◽  
Author(s):  
Deborah Di Giovanni ◽  
David Lepetit ◽  
Matthieu Boulesteix ◽  
Yohann Coute ◽  
Marc Ravallec ◽  
...  

To circumvent host immune response, some hymenopteran endo-parasitoids produce virus-like structures in their reproductive apparatus that are injected into the host together with the eggs. These viral-like structures are absolutely necessary for the reproduction of these wasps. The viral evolutionary origin of these viral-like particles has been demonstrated in only a few cases of wasp species all belonging to the Ichneumonoidea superfamily. In addition, the nature of the initial virus-wasp association remains unknown for all. This is either because no closely related descendant infects the wasps, because it has not been sampled yet, or because the virus lineage went extinct. In this paper, we show that the virus-like particles (VLPs) produced by endoparasitoids of Drosophila belonging to the Leptopilina genus (superfamily Cynipoidea) do have a viral origin, solving the debate on their origin. Furthermore, the ancestral donor virus still has close relatives infecting one of the wasp species, thus giving us insights on the ecological interaction that possibly allowed the domestication process. Intriguingly, this contemporary virus is both vertically and horizontally transmitted and has the particularity to manipulate the superparasitism behavior of the wasp. This raises the possibility that behavior manipulation has been instrumental in the birth of such association between wasps and viruses.


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