scholarly journals Phylogeography of a rare and endemic tree of Western Ghats reveals its ice age dynamics

Author(s):  
Rajasri Ray ◽  
T V Ramachandra ◽  
Avik Ray

The climatic shifts in the Quaternary Period acted as an important driving force for evolution of the world's biodiversity. In this study, responses to the ice age of a rare and endangered tree of Indian Western Ghats, Syzygium travancoricum, was investigated through a combination of molecular data and ecological niche modeling.Results indicate the moderate (nrDNA) to high (cpDNA) population structure, presence of private alleles, and absence of phylogeographic structure. Spatial distribution of diversity does not signifi- cantly support southern colonisation, nor the Palghat Gap as a geographical barrier based on the genetic structure. Combined insights from Ecological Niche Modelling and population history de- picts a probable colonisation of the Western Ghats in the late Miocene or later followed by a split into separate southern and northern populations from the middle to late Pleistocene. The prevalence of favourable conditions in the post-Last interglacial period stimulated rapid population expansion and a very recent decline. The absence of phylogeographic structure and overall climatic stability from Last Interglacial do not offer support to an existence of refugia in the Western Ghats. We con- clude by discussing appropriate conservation measures for this rare and endangered tree based on our findings.

2018 ◽  
Author(s):  
Rajasri Ray ◽  
T V Ramachandra ◽  
Avik Ray

The climatic shifts in the Quaternary Period acted as an important driving force for evolution of the world's biodiversity. In this study, responses to the ice age of a rare and endangered tree of Indian Western Ghats, Syzygium travancoricum, was investigated through a combination of molecular data and ecological niche modeling.Results indicate the moderate (nrDNA) to high (cpDNA) population structure, presence of private alleles, and absence of phylogeographic structure. Spatial distribution of diversity does not signifi- cantly support southern colonisation, nor the Palghat Gap as a geographical barrier based on the genetic structure. Combined insights from Ecological Niche Modelling and population history de- picts a probable colonisation of the Western Ghats in the late Miocene or later followed by a split into separate southern and northern populations from the middle to late Pleistocene. The prevalence of favourable conditions in the post-Last interglacial period stimulated rapid population expansion and a very recent decline. The absence of phylogeographic structure and overall climatic stability from Last Interglacial do not offer support to an existence of refugia in the Western Ghats. We con- clude by discussing appropriate conservation measures for this rare and endangered tree based on our findings.


2019 ◽  
Vol 11 (14) ◽  
pp. 14886-14890
Author(s):  
Anoop P. Balan ◽  
A. J. Robi ◽  
S. V. Predeep

Humboldtia bourdillonii is an Endangered tree legume; considered endemic to its type locality in the Periyar Tiger Reserve in Idukki District of Kerala State.  A new population of this highly threatened endemic species is located in the Vagamon Hills of Kottayam District which is about 70km away from its original locality.  The newly located population is drastically affected by the severe floods and landslides that occurred in Kerala state during August 2018.  Urgent conservation measures are needed to protect the population from further loss.  


PLoS ONE ◽  
2013 ◽  
Vol 8 (11) ◽  
pp. e82066 ◽  
Author(s):  
Shivaprakash K. Nagaraju ◽  
Ravikanth Gudasalamani ◽  
Narayani Barve ◽  
Jaboury Ghazoul ◽  
Ganeshaiah Kotiganahalli Narayanagowda ◽  
...  

2007 ◽  
Vol 2 (1) ◽  
pp. 1-8 ◽  
Author(s):  
D. K. Mesta ◽  
T. V. Ramachandra ◽  
M. D. Subash Chandran ◽  
G. R. Rao ◽  
Sameer Ali ◽  
...  

2020 ◽  
Vol 20 (3) ◽  
Author(s):  
Daniel A H Peach ◽  
Benjamin J Matthews

Abstract The coastal rock pool mosquito, Aedes (Tanakius) togoi (Theobald) (Diptera: Culicidae), is found in coastal east Asia in climates ranging from subtropical to subarctic. However, a disjunct population in the Pacific Northwest of North America has an ambiguous heritage. Two potential models explain the presence of Ae. togoi in North America: ancient Beringian dispersal or modern anthropogenic introduction. Genetic studies have thus far proved inconclusive. Here we described the putative ancient distribution of Ae. togoi habitat in east Asia and examined the climatic feasibility of a Beringian introduction into North America using modern distribution records and ecological niche modeling of bioclimatic data from the last interglacial period (~120,000 BP), the last glacial maximum (~21,000 BP), and the mid-Holocene (~6000 BP). Our results suggest that suitable climatic conditions existed for Ae. togoi to arrive in North America through natural dispersal as well as to persist there until present times. Furthermore, we find that ancient distributions of suitable Ae. togoi habitat in east Asia may explain the genetic relationships between Ae. togoi populations identified in other studies. These findings indicate the utility of ecological niche modeling as a complementary tool for studying insect phylogeography.


1988 ◽  
Vol 10 ◽  
pp. 199-200 ◽  
Author(s):  
J.M. Barnola ◽  
C. Genthon ◽  
D. Raynaud ◽  
J. Jouzel ◽  
Ye.S. Korotkevich ◽  
...  

This is a summary of the main CO2 results obtained from the Vostok core which have been presented in two papers recently published (Barnola and others 1987; Genthon and others 1987). Previous results of ice-core analysis have already provided valuable information on atmospheric CO2 variations associated with anthropogenic activities (Neftel and others 1985, Raynaud and Barnola 1985[a], Pearman and others 1986) and with climatic variations back to about 40 ka ago (Delmas and others 1980, Neftel and others 1982, Raynaud and Barnola 1985[b]). The Antarctic Vostok ice core provides a unique opportunity for extending the ice record of atmospheric CO2 variations over the last glacial–interglacial cycle back to the end of the penultimate ice age, about 160 ka ago. CO2 measurements were made at 66 different depth levels on the air enclosed in the 2083 m long core taken at Vostok Station. The air was extracted by crushing the ice, under vacuum, in a cold-room, and analysed by gas chromatography (Barnola and others 1983). The selected sampling corresponds to a time resolution between two neighbouring levels which range approximately from 2000 to 4500 years. The ages quoted in this abstract are based on the Vostok ice chronology given by Lorius and others (1985) and take into account the fact that the air is trapped in the firn well after snow deposition (between about 2500 and 4300 years after precipitation in the case of Vostok). The CO2 variations observed are compared directly with the changes in Antarctic temperature as depicted by the stable-isotope record of the Vostok ice (Jouzel and others 1988, this volume). Furthermore, a CO2-orbital forcing-climate interaction is suggested by spectral analysis of the CO2 and temperature profiles, which both show a concentration of variance around orbital frequencies. The temperature profile is clearly dominated by a 40 ka period (which can be related to the obliquity frequency) (Jouzel and others 1988, this volume), whereas the CO2 record exhibits a well-defined 21 ka peak (which can be related to the precession frequencies) and only a weak and doubtful 40 ka peak. To check the relative influence of CO2 and orbital forcings on the temperature at Vostok, we modelled the temperature signal deduced from the stable-isotope record of the ice as a response to CO2, Northern Hemisphere ice volume and local insolation forcings. The results indicate that more than 90% of the temperature variance can be explained by these three kinds of forcing and that the contribution of the CO2 radiative effect associated with an amplification factor (which should reflect the long-term feed-back mechanisms) lies between 27 and 85% of the explained variance. This approach stresses the important role that CO2 may generally have played in determining the Earth’s climate during the late Pleistocene. The most obvious feature of the Vostok CO2 record lies in its high correlation (r2 = 0.79) with the climatic record. The results obtained show high CO2 concentrations during warm periods (mean CO2 values of 263 ppm volume for the Holocene and 272 ppm volume for the last interglacial period) and low concentrations (between about 240 and 190 ppm volume) over glacial periods. Within the last glaciation, the CO2 concentrations are higher during the first part (mean CO2 value of 230 ppm volume between about 110–65 ka B.P.) than during the second part (203 ppm volume between 65–15 ka B.P.); the second part also indicates that climatic conditions were colder. Our results point to some limitation on the possible mechanisms driving the atmospheric CO2 variations and, in particular, the influence of some oceanic areas or of changes in sea-level (see, for example, Broecker and Peng 1986). The weak 41 ka cycle (this cycle seems to be a characteristic of the spectra of the proxy data for high latitudes) in our CO2 record suggests that high latitudes may not have a major influence on CO2 variations. Furthermore, the phase relationship between CO2 and the temperature variations indicates that at the beginning of the two deglaciations around 145ka B.P. and 15ka B.P., taking into account the time resolution of our profile, the CO2 increases roughly in phase with the Vostok temperature. As surface-temperature changes around Antarctica are expected to lead to changes in sea-level (see, for instance, CLIMAP Project Members 1984), our results suggest that the CO2 increase cannot lag the increase in sea-level and thus that this parameter cannot initiate the CO2 variation recorded at the beginning of those two deglaciations. Nevertheless, this does not rule out influence of variations in sea-level on atmospheric CO2 for other periods of interest, in particular during the last interglacial–glacial transition, where the CO2 lags the Vostok temperature.


2020 ◽  
Author(s):  
Daniel AH Peach ◽  
Benjamin J Matthews

The coastal rock pool mosquito, Aedes togoi, is found in coastal east Asia in climates ranging from subtropical to subarctic. However, a disjunct population in the Pacific Northwest of North America has an ambiguous heritage. Two potential models explain the presence of Ae. togoi in North America: ancient Beringian dispersal or modern anthropogenic introduction. Genetic studies have thus far proved inconclusive. Here we described the putative ancient distribution of Ae. togoi habitat in east Asia and examined the climatic feasibility of a Beringian introduction into North America using modern distribution records and ecological niche modeling of bioclimatic data from the last interglacial period (~120,000 BP), the last glacial maximum (~21,000 BP), and the mid-Holocene (~6000 BP). Our results suggest that suitable climatic conditions existed for Ae. togoi to arrive in North America through natural dispersal as well as to persist there until present times. Furthermore, we find that ancient distributions of suitable Ae. togoi habitat in east Asia may explain the genetic relationships between Ae. togoi populations identified in other studies. These findings indicate the utility of ecological niche modeling as a complementary tool for studying insect phylogeography.


1979 ◽  
Vol 34 (1) ◽  
pp. 43-49 ◽  
Author(s):  
C. Villarroel ◽  
K. Graf

Abstract. The town of La Paz is situated between the Bolivian Highland (Altiplano) and the Central Mountain Range. These two landscape units were mostly formed during the Tertiary. But at their intermediate bordering zone, geomorphological forms have 'later been reshaped. At the end of the Pliocene, a peneplain was formed (the Altiplano of today) and got covered by volcanic ashes. Since the fossilization of mammals (Posnanskytherium) in the late Pliocene, a tektonical uplift of about 3300 ft. has taken place, and huge moraines built up covering the whole city area of today. The enormous La Paz Valley was eroded above all during the last interglacial period. During the last ice age, the glaciers reached the present upper city border only and melted away very rapidly 9800 years ago at the latest.


Author(s):  
Yun Hu ◽  
Liang Lu ◽  
Tao Zhou ◽  
Kishor Kumar Sarker ◽  
Junman Huang ◽  
...  

Abstract Rhinogobius similis is distributed in East and Southeast Asia. It is an amphidromous species found mostly in freshwater and sometimes brackish waters. We have obtained a high-resolution assembly of the R. similis genome using nanopore sequencing, high throughput chromosome conformation capture (Hi-C) and transcriptomic data. The assembled genome was 890.10 Mb in size and 40.15% in GC content. Including 1,373 contigs with contig N50 is 1.54 Mb, and scaffold N50 is 41.51 Mb. All of the 1,373 contigs were anchored on 22 pairs of chromosomes. The BUSCO evaluation score was 93.02% indicating high quality of genome assembly. The repeat sequences accounted for 34.92% of the whole genome, with Retroelements (30.13%), DNA transposons (1.64%), simple repeats (2.34%) and etc. A total of 31,089 protein-coding genes were predicted in the genome and functionally annotated using Maker, of those genes, 26,893 (86.50%) were found in InterProScan5. There were 1,910 gene families expanded in R. similis, 1,171 gene families contracted and 170 gene families rapidly evolving. We have compared one rapidly change gene family (PF05970) commonly found in four species (Boleophthalmus pectinirostris, Neogobius melanostomus, Periophthalmus magnuspinnatus and R. similis), which was found probably related to the lifespan of those species. During 400 Ka-10 Ka, the period of the Guxiang Ice Age, the population of R. similis decreased drastically, and then increased gradually following the last interglacial period. A high-resolution genome of R. similis should be useful to study taxonomy, biogeography, comparative genomics and adaptive evolution of the most speciose freshwater goby genus, Rhinogobius.


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