scholarly journals Capturing variation in floral shape; a virtual3D based morphospace for Pelargonium

Author(s):  
Sara J. van de Kerke ◽  
Tiemen van Engelenhoven ◽  
Anne van Es ◽  
Laura Schat ◽  
Lisa van Son ◽  
...  

Background. Variation in floral shapes has long fascinated biologists and its modelling enables testing of evolutionary hypotheses. Recent comparative studies that explore floral shape have largely ignored 3D floral shape. We propose quantifying floral shape by using geometric morphometrics on a 3D model based on 2D photographical data and demonstrate its performance in capturing shape variation. Methods. This approach offers unique benefits to complement established imaging techniques i) by enabling adequate coverage of the potential morphospace of large and diverse flowering-plant clades; (ii) by circumventing asynchronicity in anthesis of different floral parts; and (iii) by incorporating variation in copy number of floral organs within structures. We demonstrate our approach by analysing 90 florally-diverse species of the Southern African genus Pelargonium (Geraniaceae). We quantify Pelargonium floral shapes using 117 landmarks and show similarities in reconstructed morphospaces for spur, corolla (2D datasets), and a combined 3D dataset. Results. Our results indicate that Pelargonium species differ in floral shape, which can also vary extensively within a species. PCA results of the reconstructed 3D floral models are highly congruent with the separate 2D morphospaces, indicating it is an accurate, virtual, representation of floral shape. Through our approach, we find that adding the third dimension to the data is crucial to accurately interpret the manner of, as well as levels of, shape variation in flowers.

2019 ◽  
Author(s):  
Sara J. van de Kerke ◽  
Tiemen van Engelenhoven ◽  
Anne van Es ◽  
Laura Schat ◽  
Lisa van Son ◽  
...  

Background. Variation in floral shapes has long fascinated biologists and its modelling enables testing of evolutionary hypotheses. Recent comparative studies that explore floral shape have largely ignored 3D floral shape. We propose quantifying floral shape by using geometric morphometrics on a 3D model based on 2D photographical data and demonstrate its performance in capturing shape variation. Methods. This approach offers unique benefits to complement established imaging techniques i) by enabling adequate coverage of the potential morphospace of large and diverse flowering-plant clades; (ii) by circumventing asynchronicity in anthesis of different floral parts; and (iii) by incorporating variation in copy number of floral organs within structures. We demonstrate our approach by analysing 90 florally-diverse species of the Southern African genus Pelargonium (Geraniaceae). We quantify Pelargonium floral shapes using 117 landmarks and show similarities in reconstructed morphospaces for spur, corolla (2D datasets), and a combined 3D dataset. Results. Our results indicate that Pelargonium species differ in floral shape, which can also vary extensively within a species. PCA results of the reconstructed 3D floral models are highly congruent with the separate 2D morphospaces, indicating it is an accurate, virtual, representation of floral shape. Through our approach, we find that adding the third dimension to the data is crucial to accurately interpret the manner of, as well as levels of, shape variation in flowers.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8823
Author(s):  
Sara J. van de Kerke ◽  
Tiemen van Engelenhoven ◽  
Anne L. van Es ◽  
Laura Schat ◽  
Lisa M. van Son ◽  
...  

Background Variation in floral shapes has long fascinated biologists and its modelling enables testing of evolutionary hypotheses. Recent comparative studies that explore floral shape have largely ignored 3D floral shape. We propose quantifying floral shape by using geometric morphometrics on a virtual3D model reconstructed from 2D photographical data and demonstrate its performance in capturing shape variation. Methods This approach offers unique benefits to complement established imaging techniques (i) by enabling adequate coverage of the potential morphospace of large and diverse flowering-plant clades; (ii) by circumventing asynchronicity in anthesis of different floral parts; and (iii) by incorporating variation in copy number of floral organs within structures. We demonstrate our approach by analysing 90 florally-diverse species of the Southern African genus Pelargonium (Geraniaceae). We quantify Pelargonium floral shapes using 117 landmarks and show similarities in reconstructed morphospaces for nectar tube, corolla (2D datasets), and a combined virtual3D dataset. Results Our results indicate that Pelargonium species differ in floral shape, which can also vary extensively within a species. PCA results of the reconstructed virtual3D floral models are highly congruent with the separate 2D morphospaces, indicating it is an accurate, virtual, representation of floral shape. Through our approach, we find that adding the third dimension to the data is crucial to accurately interpret the manner of, as well as levels of, shape variation in flowers.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Izabela Zgłobicka ◽  
Jürgen Gluch ◽  
Zhongquan Liao ◽  
Stephan Werner ◽  
Peter Guttmann ◽  
...  

AbstractThe diatom shell is an example of complex siliceous structure which is a suitable model to demonstrate the process of digging into the third dimension using modern visualization techniques. This paper demonstrates importance of a comprehensive multi-length scale approach to the bio-structures/materials with the usage of state-of-the-art imaging techniques. Imaging of diatoms applying visible light, electron and X-ray microscopy provide a deeper insight into the morphology of their frustules.


2008 ◽  
Vol 1 (2) ◽  
pp. 103-115
Author(s):  
Yinzhi Lai ◽  
Lina Wang ◽  
Ke Cheng ◽  
William Kisaalita

2021 ◽  
Vol 13 (15) ◽  
pp. 3037
Author(s):  
Huy Hoa Huynh ◽  
Jaehung Yu ◽  
Lei Wang ◽  
Nam Hoon Kim ◽  
Bum Han Lee ◽  
...  

This paper demonstrates an integrative 3D model of short-wave infrared (SWIR) hyperspectral mapping and unmanned aerial vehicle (UAV)-based digital elevation model (DEM) for a carbonate rock outcrop including limestone and dolostone in a field condition. The spectral characteristics in the target outcrop showed the limestone well coincided with the reference spectra, while the dolostone did not show clear absorption features compared to the reference spectra, indicating a mixture of clay minerals. The spectral indices based on SWIR hyperspectral images were derived for limestone and dolostone using aluminum hydroxide (AlOH), hydroxide (OH), iron hydroxide (FeOH), magnesium hydroxide (MgOH) and carbonate ion (CO32−) absorption features based on random forest and logistic regression models with an accuracy over 87%. Given that the indices were derived from field data with consideration of commonly occurring geological units, the indices have better applicability for real world cases. The integrative 3D geological model developed by co-registration between hyperspectral map and UAV-based DEM using best matching SIFT descriptor pairs showed the 3D rock formations between limestone and dolostone. Moreover, additional geological information of the outcrop was extracted including thickness, slope, rock classification, strike, and dip.


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