scholarly journals Cytoprotection by a naturally occurring variant of ATP5G1 in Arctic ground squirrel neural progenitor cells

eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Neel S Singhal ◽  
Meirong Bai ◽  
Evan M Lee ◽  
Shuo Luo ◽  
Kayleigh R Cook ◽  
...  

Many organisms in nature have evolved mechanisms to tolerate severe hypoxia or ischemia, including the hibernation-capable Arctic ground squirrel (AGS). Although hypoxic or ischemia tolerance in AGS involves physiological adaptations, little is known about the critical cellular mechanisms underlying intrinsic AGS cell resilience to metabolic stress. Through cell survival-based cDNA expression screens in neural progenitor cells, we identify a genetic variant of AGS Atp5g1 that confers cell resilience to metabolic stress. Atp5g1 encodes a subunit of the mitochondrial ATP synthase. Ectopic expression in mouse cells and CRISPR/Cas9 base editing of endogenous AGS loci revealed causal roles of one AGS-specific amino acid substitution in mediating cytoprotection by AGS ATP5G1. AGS ATP5G1 promotes metabolic stress resilience by modulating mitochondrial morphological change and metabolic functions. Our results identify a naturally occurring variant of ATP5G1 from a mammalian hibernator that critically contributes to intrinsic cytoprotection against metabolic stress.

2020 ◽  
Author(s):  
Neel S. Singhal ◽  
Meirong Bai ◽  
Evan M. Lee ◽  
Shuo Luo ◽  
Kayleigh R. Cook ◽  
...  

AbstractMany organisms, from anaerobic bacteria to hibernating ground squirrels, have evolved mechanisms to tolerate severe hypoxia or ischemia. In particular, the arctic ground squirrel (AGS) has been shown to be highly resilient to ischemic and reperfusion injuries, demonstrating an ability to withstand metabolic stress under hibernation conditions. Although physiological adaptations are critical to ischemic tolerance in AGS, little is known about cellular mechanisms underlying intrinsic AGS cell tolerance to metabolic stressors. Through cell survival-based cDNA expression screens and comparative genomics, we have discovered that in AGS, a cytoprotective variant of ATP5G1 helps confer improved mitochondrial metabolism and cell resilience to metabolic stress. ATP5G1 encodes a proton-transporting subunit of the mitochondrial ATP synthase complex. Ectopic expression in mouse cells and CRISPR/Cas9 base editing of the endogenous AGS locus revealed causal roles of one AGS-specific amino acid substitution (leucine-32) in mediating the cytoprotective effects of AGS ATP5G1. We provide evidence that AGS ATP5G1 promotes cell resilience to stress by modulating mitochondrial morphological change and metabolic functions. Thus, our results identify a naturally occurring variant of ATP5G1 from a mammalian hibernator that causally contributes to intrinsic cytoprotection against metabolic stresses.


2021 ◽  
Author(s):  
Michael F Wells ◽  
James Nemesh ◽  
Sulagna Ghosh ◽  
Jana M Mitchell ◽  
Curtis J Mello ◽  
...  

Variation in the human genome contributes to abundant diversity in human traits and vulnerabilities, but the underlying molecular and cellular mechanisms are not yet known, and will need scalable approaches to accelerate their recognition. Here, we advanced and applied an experimental platform that analyzes genetic, molecular, and phenotypic heterogeneity across cells from very many human donors cultured in a single, shared in vitro environment, with algorithms (Dropulation and Census-seq) for assigning phenotypes to individual donors. We used natural genetic variation and synthetic (CRISPR-Cas9) genetic perturbations to analyze the vulnerability of neural progenitor cells to infection with Zika virus. These analyses identified a common variant in the antiviral IFITM3 gene that regulated IFITM3 expression and explained most inter-individual variation in NPCs' susceptibility to Zika virus infectivity. These and other approaches could provide scalable ways to recognize the impact of genes and genetic variation on cellular phenotypes.


2016 ◽  
Vol 2016 ◽  
pp. 1-13 ◽  
Author(s):  
Peter Helmut Neckel ◽  
Roland Mohr ◽  
Ying Zhang ◽  
Bernhard Hirt ◽  
Lothar Just

Postnatal neural progenitor cells of the enteric nervous system are a potential source for future cell replacement therapies of developmental dysplasia like Hirschsprung’s disease. However, little is known about the molecular mechanisms driving the homeostasis and differentiation of this cell pool. In this work, we conducted Affymetrix GeneChip experiments to identify differences in gene regulation between proliferation and early differentiation of enteric neural progenitors from neonatal mice. We detected a total of 1333 regulated genes that were linked to different groups of cellular mechanisms involved in cell cycle, apoptosis, neural proliferation, and differentiation. As expected, we found an augmented inhibition in the gene expression of cell cycle progression as well as an enhanced mRNA expression of neuronal and glial differentiation markers. We further found a marked inactivation of the canonical Wnt pathway after the induction of cellular differentiation. Taken together, these data demonstrate the various molecular mechanisms taking place during the proliferation and early differentiation of enteric neural progenitor cells.


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 2350-2350
Author(s):  
Alessandra Giorgetti ◽  
Leopoldo Laricchia-Robbio ◽  
Raffaella Fazzina ◽  
Maria-Carolina Marchetto ◽  
Diana Yu ◽  
...  

Abstract Abstract 2350 The finding that the epigenome of differentiated cells can be reset to a pluripotent state indicates that any somatic cell may potentially change or reverse its already established developmental identity through the delivery of appropriate instructive signals. Here we show the possibility of generating mature and functional neurons from Cord Blood (CB) cells without reprogramming into a pluripotent state. In particular, we demonstrate that the ectopic expression of two transcription factors (SOX2, c-MYC) as well as only one factor (SOX2) allows the generation of proliferating neural progenitor cells starting from CB CD133+ cells. Given its important role in neural stem cell activity, we first tested if only SOX2 was sufficient to induce the conversion of CB cells into neural progenitor cells. Three weeks after retrovirus infection, we observed the formation of a few colonies showing an iPS morphology, although they were negative for pluripotency markers (OCT4, NANOG, SSEA4). However, these colonies homogenously expressed multiple neural markers (TJU1, GFAP, MAP2, PAX6, NF) and we called them CB-inducible neural cells (CB-iNCs). Since, it is known that c-MYC has a role in controlling self-renewal and proliferation of neural progenitor cells, we therefore tested the neuron-inducing activity of SOX2 in combination with c-MYC. The data showed that the presence of c-MYC increased the efficiency 20 fold. In addition, we have demonstrated that CB-iNCs were able to differentiate into functional mature neurons in vitro and in vivo. The expression of the mature synaptic marker, synapsin, and both excitatory (VGLUT-1) as well as inhibitory markers (GABA), indicated that CB-derived neurons had the protein machinery necessary to fire action potentials. To investigate if CB-derived neurons had functional membrane properties similar to neurons, we performed patch-clamp recording and calcium transient assays. The results confirmed that CB-derived neurons could form functional synapses and generate action potentials. Finally, an in vivo assay, where CB-derived neurons were injected into dentate girus of mice hippocampus, demonstrated that these cells were able to engraft, differentiate as well as extend processes along the corpus callosum, one month after transplantation. Next we compared the global gene expression analysis of CB CD133+ cells, CB-iNCs and CB-derived mature neurons. The results indicated that CB-derived neurons have a neural transcription profile similar to neurons derived from human ES. In addition, to gain further insight into the role of SOX2 during the conversion process, we investigated whether genes up-regulated in CB-iNCs, which are known to have potential SOX2 binding sites were also bound by SOX2 in our CB-iNCs. Using Chromatin immunoprecipitation (ChIP) we found evidence that SOX2 was bound to NEUROD1, DCX, NAV2, MASH1 and CHD7 genes. All these data suggest that the ectopic expression of SOX2 and c-MYC as well as only SOX2 can rapidly convert CB cells into function neurons. The possibility to generate functional neurons starting from CB cells, in an efficient and easy way, could offer a novel and powerful system for studying human cellular identity and plasticity. Disclosures: No relevant conflicts of interest to declare.


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