pyrimidine nucleoside
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2021 ◽  
Author(s):  
Felix Kaspar ◽  
Darian S. Wolff ◽  
Peter Neubauer ◽  
Anke Kurreck ◽  
Vickery Arcus

Enzyme-catalyzed reactions sometimes display curvature in their Eyring plots in the absence of denaturation, indicative of a change in activation heat capacity. However, pH and (de)protonation effects on this phenomenon have remained unexplored. Herein, we report a kinetic characterization of the thermophilic pyrimidine nucleoside phosphorylase from <i>Geobacillus thermoglucosidasius</i> across a two-dimensional working space covering 35 °C and 3 pH units with two substrates displaying different pK<sub>a</sub> values. Our analysis revealed the presence of a measurable activation heat capacity change in this reaction system, which showed no significant dependence on medium pH or substrate charge. Our results further describe the remarkable effects of a single halide substitution which has a minor influence on the heat capacity change but conveys a significant kinetic effect by lowering the activation enthalpy, causing a >10-fold rate increase. Collectively, our results present an important piece in the understanding of enzymatic systems across multidimensional working spaces where the choice of reaction condition can affect rate, affinity and thermodynamic phenomena independently of one another.<br>


2021 ◽  
Author(s):  
Felix Kaspar ◽  
Darian S. Wolff ◽  
Peter Neubauer ◽  
Anke Kurreck ◽  
Vickery Arcus

Enzyme-catalyzed reactions sometimes display curvature in their Eyring plots in the absence of denaturation, indicative of a change in activation heat capacity. However, pH and (de)protonation effects on this phenomenon have remained unexplored. Herein, we report a kinetic characterization of the thermophilic pyrimidine nucleoside phosphorylase from <i>Geobacillus thermoglucosidasius</i> across a two-dimensional working space covering 35 °C and 3 pH units with two substrates displaying different pK<sub>a</sub> values. Our analysis revealed the presence of a measurable activation heat capacity change in this reaction system, which showed no significant dependence on medium pH or substrate charge. Our results further describe the remarkable effects of a single halide substitution which has a minor influence on the heat capacity change but conveys a significant kinetic effect by lowering the activation enthalpy, causing a >10-fold rate increase. Collectively, our results present an important piece in the understanding of enzymatic systems across multidimensional working spaces where the choice of reaction condition can affect rate, affinity and thermodynamic phenomena independently of one another.<br>


Cancers ◽  
2021 ◽  
Vol 13 (5) ◽  
pp. 966
Author(s):  
Raffaele Di Francia ◽  
Stefania Crisci ◽  
Angela De Monaco ◽  
Concetta Cafiero ◽  
Agnese Re ◽  
...  

Cytarabine is a pyrimidine nucleoside analog, commonly used in multiagent chemotherapy regimens for the treatment of leukemia and lymphoma, as well as for neoplastic meningitis. Ara-C-based chemotherapy regimens can induce a suboptimal clinical outcome in a fraction of patients. Several studies suggest that the individual variability in clinical response to Leukemia & Lymphoma treatments among patients, underlying either Ara-C mechanism resistance or toxicity, appears to be associated with the intracellular accumulation and retention of Ara-CTP due to genetic variants related to metabolic enzymes. Herein, we reported (a) the latest Pharmacogenomics biomarkers associated with the response to cytarabine and (b) the new drug formulations with optimized pharmacokinetics. The purpose of this review is to provide readers with detailed and comprehensive information on the effects of Ara-C-based therapies, from biological to clinical practice, maintaining high the interest of both researcher and clinical hematologist. This review could help clinicians in predicting the response to cytarabine-based treatments.


Author(s):  
Theresa Kolmar ◽  
Simon M. Büllmann ◽  
Christopher Sarter ◽  
Katharina Höfer ◽  
Andres Jäschke

2021 ◽  
Author(s):  
Theresa Kolmar ◽  
Simon M. Büllmann ◽  
Christopher Sarter ◽  
Katharina Höfer ◽  
Andres Jäschke

Pharmacia ◽  
2021 ◽  
Vol 68 (1) ◽  
pp. 23-34
Author(s):  
Md Z. H. Bulbul ◽  
Tasneem S. Chowdhury ◽  
Md M. H. Misbah ◽  
Jannatul Ferdous ◽  
Sujan Dey ◽  
...  

Nucleoside derivatives are important therapeutic drugs and are the focal point in the ongoing search for novel, more potent drug targets. In this study, a new series of pyrimidine nucleoside i.e., uridine (1) derivatives were synthesized via direct method and evaluated for their antimicrobial potential activity. The title compound uridine (1) was treated with triphenylmethyl chloride in pyridine to give the 5´-O-(triphenylmethyl)uridine derivative (2), which was subsequently derivatized to create a series of 2´,3´-di-O-acyl analogs containing a wide variety of functionalities in a single molecular framework. In vitro antimicrobial functionality tests were determined against both human and plant pathogens by disc diffusion and food poisoned techniques. The chemical structures of the synthesized compounds were confirmed on the basis of their spectral, analytical, physicochemical data. The antimicrobial results indicated that the synthesized derivatives exhibited moderate to good antibacterial and antifungal activity; in particular, they were found to be more effective against fungal phytopathogens than against human bacterial strains. Compounds 7, 9, and 14 were of particular interest as they exhibited noteworthy antifungal and antibacterial properties. In vitro MTT assays revealed that compound 9 was effective against Ehrlich’s ascites carcinoma (EAC) cells, resulting in 7.12% and 1.34% cell growth inhibition at concentrations of 200 and 6.25 µg/ml, respectively. The IC50 value for compound 9 was rather high and found to be 1956.25 µg/ml. Structure-activity relationship (SAR) studies were also conducted to predict structural and pharmacokinetic properties. The findings of this study indicate that the different uridine derivatives are potentially useful antimicrobial agents for the advancement of future pharmaceutical research.


Author(s):  
Mieke Guinan ◽  
Ningwu Huang ◽  
Chris Samuel Hawes ◽  
Marcelo A Lima ◽  
Mark Smith ◽  
...  

Analogues of the canonical nucleosides required for nucleic acid synthesis have a longstanding presence and proven capability within antiviral and anticancer research. 4’-Thionucleosides, that incorporate bioisosteric replacement of furanose oxygen...


2021 ◽  
Author(s):  
M. McErlean ◽  
X. Liu ◽  
Z. Cui ◽  
B. Gust ◽  
S. G. Van Lanen

This review highlights the functional assignment and partial characterization of multiple proteins involved in the biosynthesis of structurally complex pyrimidine-derived nucleoside antibiotics.


2020 ◽  
Vol 61 (49) ◽  
pp. 152598
Author(s):  
Martyna Koplūnaitė ◽  
Kamilė Butkutė ◽  
Rolandas Meškys ◽  
Daiva Tauraitė

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