Evidence of Air and Surface Contamination with SARS-CoV-2 in a Major Hospital in Portugal

As the third wave of the COVID-19 pandemic hit Portugal, it forced the country to reintroduce lockdown measures due to hospitals reaching their full capacities. Under these circumstances, environmental contamination by SARS-CoV-2 in different areas of one of Portugal’s major Hospitals was assessed between 21 January and 11 February 2021. Air samples (n = 44) were collected from eleven different areas of the Hospital (four COVID-19 and seven non-COVID-19 areas) using Coriolis® μ and Coriolis® Compact cyclone air sampling devices. Surface sampling was also performed (n = 17) on four areas (one COVID-19 and three non-COVID-19 areas). RNA extraction followed by a one-step RT-qPCR adapted for quantitative purposes were performed. Of the 44 air samples, two were positive for SARS-CoV-2 RNA (6575 copies/m3 and 6662.5 copies/m3, respectively). Of the 17 surface samples, three were positive for SARS-CoV-2 RNA (200.6 copies/cm2, 179.2 copies/cm2, and 201.7 copies/cm2, respectively). SARS-CoV-2 environmental contamination was found both in air and on surfaces in both COVID-19 and non-COVID-19 areas. Moreover, our results suggest that longer collection sessions are needed to detect point contaminations. This reinforces the need to remain cautious at all times, not only when in close contact with infected individuals. Hand hygiene and other standard transmission-prevention guidelines should be continuously followed to avoid nosocomial COVID-19.

An Attempt to Study Natural H2 Resources across an Oceanic Ridge Penetrating a Continent: The Asal–Ghoubbet Rift (Republic of Djibouti)

Dihydrogen (H2) is generated by fluid–rock interactions along mid-ocean ridges (MORs) and was not, until recently, considered as a resource. However, in the context of worldwide efforts to decarbonize the energy mix, clean hydrogen is now highly sought after, and the production of natural H2 is considered to be a powerful alternative to electrolysis. The Afar Rift System has many geological features in common with MORs and offers potential in terms of natural H2 resources. Here, we present data acquired during initial exploration in this region. H2 contents in soil and within fumaroles were measured along a 200 km section across the Asal–Ghoubbet rift and the various intervening grabens, extending from Obock to Lake Abhe. These newly acquired data have been synthesized with existing data, including those from the geothermal prospect area of the Asal–Ghoubbet rift zone. Our results demonstrate that basalt alteration with oxidation of iron-rich facies and simultaneous reduction in water is the likely the source of the hydrogen, although H2S reduction cannot be ruled out. However, H2 volumes at the surface within fumaroles were found to be low, reaching only a few percent. These values are considerably lower than those found in MORs. This discrepancy may be attributed to bias introduced by surface sampling; for example, microorganisms may be preferentially consuming H2 near the surface in this environment. However, the low H2 generation rates found in the study area could also be due to a lack of reactants, such as fayalite (i.e., owing to the presence of low-olivine basalts with predominantly magnesian olivines), or to the limited volume and slow circulation of water. In future, access to additional subsurface data acquired through the ongoing geothermal drilling campaign will bring new insight to help answer these questions.

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp

Monitoring severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on surfaces is emerging as an important tool for identifying past exposure to individuals shedding viral RNA. Our past work has demonstrated that SARS-CoV-2 reverse transcription-quantitative PCR (RT-qPCR) signals from surfaces can identify when infected individuals have touched surfaces such as Halloween candy, and when they have been present in hospital rooms or schools. However, the sensitivity and specificity of surface sampling as a method for detecting the presence of a SARS-CoV-2 positive individual, as well as guidance about where to sample, has not been established. To address these questions, and to test whether our past observations linking SARS-CoV-2 abundance to Rothia spp. in hospitals also hold in a residential setting, we performed detailed spatial sampling of three isolation housing units, assessing each sample for SARS-CoV-2 abundance by RT-qPCR, linking the results to 16S rRNA gene amplicon sequences to assess the bacterial community at each location and to the Cq value of the contemporaneous clinical test. Our results show that the highest SARS-CoV-2 load in this setting is on touched surfaces such as light switches and faucets, but detectable signal is present in many non-touched surfaces that may be more relevant in settings such as schools where mask wearing is enforced. As in past studies, the bacterial community predicts which samples are positive for SARS-CoV-2, with Rothia sp. showing a positive association.ImportanceSurface sampling for detecting SARS-CoV-2, the virus that causes coronavirus disease 2019 (COVID-19), is increasingly being used to locate infected individuals. We tested which indoor surfaces had high versus low viral loads by collecting 381 samples from three residential units where infected individuals resided, and interpreted the results in terms of whether SARS-CoV-2 was likely transmitted directly (e.g. touching a light switch) or indirectly (e.g. by droplets or aerosols settling). We found highest loads where the subject touched the surface directly, although enough virus was detected on indirectly contacted surfaces to make such locations useful for sampling (e.g. in schools, where students do not touch the light switches and also wear masks so they have no opportunity to touch their face and then the object). We also documented links between the bacteria present in a sample and the SARS-CoV-2 virus, consistent with earlier studies.

Chronostratigraphy of blue ice at the Larsen Glacier in Northern Victoria Land, East Antarctica

Blue ice areas (BIAs) allow for the collection of large-sized old ice samples in a cost-effective way because deep ice outcrops and make old ice samples available close to the surface. However, most chronostratigraphy studies on blue ice are complicated due to fold and fault structures. Here, we report a simple stratigraphy of ice from the Larsen BIA, Antarctica, making the area valuable for paleoclimate studies. Ice layers defined by dust bands and ground penetration radar (GPR) surveys indicate a monotonic increase in age along the ice flow direction on the downstream side, while the upstream ice exhibits a potential repetition of ages on scales of tens of meters, as shown in the complicated fold structure. Stable water isotopes (δ18Oice and δ2Hice) and components of the occluded air (i.e., CO2, N2O, CH4, δ15N-N2, δ18Oatm (= δ18O-O2), δO2/N2, δAr/N2, 81Kr and 85Kr) were analyzed for surface ice and shallow ice core samples. Correlating δ18Oice, δ18Oatm, and CH4 records of Larsen ice with existing ice core records indicates that the gas age at shallow coring sites ranges between 9.2–23.4 ka BP and ice age for entire surface sampling sites between 5.6–24.7 ka BP. Absolute radiometric 81Kr dating for the two cores confirms the ages within acceptable levels of analytical uncertainty. Our study demonstrates that BIA in northern Victoria Land may help researchers obtain high-quality records for paleoclimate and atmospheric greenhouse gas compositions through the last deglaciation.

SinGAN-Based Asteroid Surface Image Generation

While it is risky considering spacecraft constraints and unknown environment on asteroid, surface sampling is an important technique for asteroid exploration. One of the sample return missions is to seek an optimal landing site, which may be in hazardous terrain. Since autonomous landing is particularly challenging, it is necessary to simulate the effectiveness of this process and prove the onboard optical hazard avoidance is robust to various uncertainties. This paper aims to generate realistic surface images of asteroids for simulations of asteroid exploration. A SinGAN-based method is proposed, which only needs a single input image for training a pyramid of multi-scale patch generators. Various images with high fidelity can be generated, and manipulations such as shape variation, illumination direction variation, super resolution generation are well achieved. The method's applicability is validated by extensive experimental results and evaluations. At last, the proposed method has been used to help set up a test environment for landing site selection simulation.

The NICU flora: An effective technique to sample surfaces

Objective Environmental surface sampling in healthcare settings is not routinely recommended. There are several methods for environmental surface sampling, however the yield of these methods is not well defined. The aim of the present study is to compare two methods of environmental surface sampling, to characterize the neonatal intensive care unit (NICU) flora, compare it with rates of infection and colonization and correlate it with the workload. Design and setting First, the yield of the swab and the gauze-pad methods were compared. Then, longitudinal surveillance of environmental surface sampling was performed over 6 months,once weekly, from pre-specified locations in the NICU. Samples were streaked onto selective media and bacterial colonies were identified using matrix-assisted laser desorption-ionization time-of-flight (MALDI-TOF). Results The number of colonies isolated using the gauze pad method was significantly higher compared with the swab method. Overall, 87 bacterial species of 30 different bacterial genera were identified on the NICU environmental surfaces. Of these, 18% species were potential pathogens, and the other represent skin and environmental flora. In 20% of clinical cultures and in 60% of colonization cultures, the pathogen was isolated from the infant’s environment as well. The number of bacteria in environmental cultures was negatively correlated with nurse/patient ratio in the day prior to the culture. Conclusion The gauze pad method for environmental sampling is robust and readily available. The NICU flora is very diverse and is closely related with the infants’ flora, therefore it may serve as a reservoir for potential pathogens.