steric effect
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Author(s):  
Kristjan Kunnus ◽  
Meiyuan Guo ◽  
Elisa Biasin ◽  
Christopher B. Larsen ◽  
Charles J. Titus ◽  
...  

2022 ◽  
Author(s):  
Divyansh Prakash ◽  
Suchitra Mitra ◽  
Morgan Murphy ◽  
Saumen Chakraborty

We report a series of de novo designed Artificial Cu Peptides (ArCuPs) that oxidize and peroxygenate C-H bonds of model abiotic substrates via electrochemically generated Cu-oxygen species using H2O2 as the terminal oxidant, akin to native Cu enzymes. Detailed assessment of kinetic parameters established the catalytic nature of the ArCuPs. Selective alteration of outer sphere steric at the d layers above and below the Cu site allows facilitated access of substrates, where a more pronounced effect on catalysis is observed when space is created at the d layer below the Cu site via Ile to Ala mutation producing a kcat of 6.2 s-1, TONmax of 14800 and catalytic proficiency (kcat/KM/kuncat) of 340 M-1 for the oxidation of benzyl alcohol. Independent spectroscopic studied revealed that the rate of formation of the Cu-oxygen species and the spectroscopic feature of the most active variant is distinct compared to the other ArCuPs. Systematic alteration of outer sphere hydrophobicity led to a correlated tuning of the T2 Cu site redox potentials by ~80 mV. The enhanced activity of the ArCuP variant is attributed to a combination of steric effect that allows easy access of substrates, the nature of Cu-oxygen species, and stability of this construct compared to others, where Ile to Ala mutation unexpectedly leads to a higher thermostability which is further augmented by Cu binding.


2022 ◽  
Author(s):  
Divyansh Prakash ◽  
Suchitra Mitra ◽  
Morgan Murphy ◽  
Saumen Chakraborty

We report a series of de novo designed Artificial Cu Peptides (ArCuPs) that oxidize and peroxygenate C-H bonds of model abiotic substrates via electrochemically generated Cu-oxygen species using H2O2 as the terminal oxidant, akin to native Cu enzymes. Detailed assessment of kinetic parameters established the catalytic nature of the ArCuPs. Selective alteration of outer sphere steric at the d layers above and below the Cu site allows facilitated access of substrates, where a more pronounced effect on catalysis is observed when space is created at the d layer below the Cu site via Ile to Ala mutation producing a kcat of 6.2 s-1, TONmax of 14800 and catalytic proficiency (kcat/KM/kuncat) of 340 M-1 for the oxidation of benzyl alcohol. Independent spectroscopic studied revealed that the rate of formation of the Cu-oxygen species and the spectroscopic feature of the most active variant is distinct compared to the other ArCuPs. Systematic alteration of outer sphere hydrophobicity led to a correlated tuning of the T2 Cu site redox potentials by ~80 mV. The enhanced activity of the ArCuP variant is attributed to a combination of steric effect that allows easy access of substrates, the nature of Cu-oxygen species, and stability of this construct compared to others, where Ile to Ala mutation unexpectedly leads to a higher thermostability which is further augmented by Cu binding.


2022 ◽  
Author(s):  
Divyansh Prakash ◽  
Suchitra Mitra ◽  
Morgan Murphy ◽  
Saumen Chakraborty

We report a series of de novo designed Artificial Cu Peptides (ArCuPs) that oxidize and peroxygenate C-H bonds of model abiotic substrates via electrochemically generated Cu-oxygen species using H2O2 as the terminal oxidant, akin to native Cu enzymes. Detailed assessment of kinetic parameters established the catalytic nature of the ArCuPs. Selective alteration of outer sphere steric at the d layers above and below the Cu site allows facilitated access of substrates, where a more pronounced effect on catalysis is observed when space is created at the d layer below the Cu site via Ile to Ala mutation producing a kcat of 6.2 s-1, TONmax of 14800 and catalytic proficiency (kcat/KM/kuncat) of 340 M-1 for the oxidation of benzyl alcohol. Independent spectroscopic studied revealed that the rate of formation of the Cu-oxygen species and the spectroscopic feature of the most active variant is distinct compared to the other ArCuPs. Systematic alteration of outer sphere hydrophobicity led to a correlated tuning of the T2 Cu site redox potentials by ~80 mV. The enhanced activity of the ArCuP variant is attributed to a combination of steric effect that allows easy access of substrates, the nature of Cu-oxygen species, and stability of this construct compared to others, where Ile to Ala mutation unexpectedly leads to a higher thermostability which is further augmented by Cu binding.


2021 ◽  
Vol 05 (02) ◽  
pp. 1-9
Author(s):  
Ghadir Khalaf ◽  
Sameerah Mustafa ◽  
Ghaidaa Kadhim ◽  
Hadeel Hasan

Alkaline hydrolysis rates coefficients for the series of methyl 3-(7-substituted-1-naphthyl) propynoate was calculated in 70%v/v dimethylsulphoxide-water at various temperatures (25,30,40, and 50̊ C). The pKa values of 3-(7-substituted-1-naphthyl) propynoic acid and (E)- 3-(7-substituted-1-naphthyl) propenoic acid calculated in 80%w/w 2-methoxyethanol-water at room temperature (25.0̊ C). logk2 of esterification rate coefficients for 3-(7-substituted-1-naphthyl) propynioc acid and (E)-3(7-substituted-1-naphthyl) propenioc acid with DDM have been measured at 30.0̊ C. Reversed substituent dipolar effects were found in the ionization reaction. In the esterification reaction with DDM the result show similar but reduced substituted effects. Rate retardations was found in the alkaline hydrolysis. It could be result from steric effect or reversal of substituent dipolar effect with a combination of steric effect.


Mathematics ◽  
2021 ◽  
Vol 9 (24) ◽  
pp. 3222
Author(s):  
Jiaxuan Zheng ◽  
Siyi An ◽  
Yongjun Jian

Here, space electroosmotic thrusters in a rigid nanochannel with high wall zeta potentials are investigated numerically, for the first time, considering the effect of finite size of the ionic species. The effect, which is called a steric effect, is often neglected in research about micro/nano thrusters. However, it has vital influences on the electric potential and flow velocity in electric double layers, so that the thruster performances generated by the fluid motion are further affected. These performances, including thrust, specific impulse, thruster efficiency, and the thrust-to-power ratio, are described by using numerical algorithms, after obtaining the electric potential and velocity distributions under high wall zeta potentials ranging from −25.7 mV to −128.5 mV. As expected, the zeta potential can promote the development of thruster performances so as to satisfy the requirement of space missions. Moreover, for real situation with consideration of the steric effect, the thruster thrust and efficiency significantly decrease to 5–30 micro Newtons and 80–90%, respectively, but the thrust-to-power ratio is opposite, and expends a short specific impulse of about 50–110 s.


Author(s):  
Yunzhi Xie ◽  
Chunhua Liu ◽  
Linxiu Cheng ◽  
Yulan Fan ◽  
Huifang Li ◽  
...  

2021 ◽  
Vol 25 ◽  
Author(s):  
Luis Daniel Pedro-Hernández ◽  
Marcos Martínez-García

: A new class of dendrimers with open-resorcinarenes has been synthesized in good yields (77-85%). The open-resorcinarenes showed a high capacity for functionalization, having eight hydroxyl groups. The Williamson reaction with N,N-bis(2-azidoethyl)-2-bromo acetamide did not show any steric effect, obtaining sixteen azide terminal groups, which gave us the possibility to obtain a high molecular weight dendrimer via the azide-alkyne click reaction with prop-2-yn-1-yl-(ibuprofen)L-serinate derivatives to obtain the triazole ring spacers and the L-serinate(ibuprofen) derivatives as terminal groups. Also, we carried out the deprotection reaction of the L-serinate moiety terminal groups of the dendrimer 10 in good yields (95%). Three novel open-resorcinarene den-drimers with sixteen ibuprofen-L-serinate derivatives and hydroxyl, tert-butyl, and carboxylic acid; therefore, with three different terminal groups, with possible nanomedical activity are reported.


Author(s):  
Yuelang Chen ◽  
Zhiao Yu ◽  
Paul Rudnicki ◽  
Huaxin Gong ◽  
Zhuojun Huang ◽  
...  

2021 ◽  
Vol 13 (19) ◽  
pp. 3809
Author(s):  
Jianhu Wang ◽  
Juan Li ◽  
Jiyuan Yin ◽  
Wei Tan ◽  
Yuchen Liu

The satellite altimeter data, temperature and salinity data, and 1.5-layer reduced gravity model are used to quantitatively evaluate the contributions of the steric effect and the dynamic process to sea level variations in the Tropical Pacific Ocean (TPO) on different time scales. Concurrently, it also analyses the influence of wind forcing over the different regions of the Pacific Ocean on the sea level variations in the TPO. Seasonal sea level variations in the TPO were the most important in the middle and eastern regions of the 5°–15°N latitude zone, explaining 40–60% of the monthly mean sea level variations. Both the steric effect and dynamic process jointly affected the seasonal sea level variations. Among them, the steric effect was dominant, contributing over 70% in most regions of the TPO, while the dynamic process primarily acted near the equator and southwest regions, contributing approximately 55–85%. At the same time, the seasonal dynamic sea level variations were caused by the combined actions of primarily local wind forcing, alongside subtropical north Pacific wind forcing. On the interannual to decadal time scale, the sea level interannual variations were significant in the northwestern, southwestern, and middle eastern regions of the TPO and explained 45–60% of the monthly mean sea level variations. The decadal sea level variations were the most intense in the eastern Philippine Sea, contributing 25–45% to the monthly mean sea level variations. The steric effect and the dynamic process can explain 100% of the interannual to decadal sea level variations. The contribution of the steric effect was generally high, accounting for more than 85% in the regions near the equator. The impact of the dynamic process was mainly concentrated in the northwest, northeast, and southern regions of the TPO, contributing approximately 55–80%. Local wind forcing is the leading role of interannual to decadal sea level variations. The combined actions of El Niño–Southern Oscillation (ENSO) and the Pacific Decadal Oscillation (PDO) can explain 90% of the interannual to decadal sea level variations in the northwestern and eastern of the TPO.


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