single sequence repeat
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2021 ◽  
Author(s):  
Adelaїde P. Ouedraogo ◽  
Agyemang Danquah ◽  
Jean‐Baptiste Tignegre ◽  
Leandre S. Poda ◽  
Joseph B. Batieno ◽  
...  

Agronomy ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1256
Author(s):  
François Luro ◽  
Claudia Garcia Neves ◽  
Gilles Costantino ◽  
Abelmon da Silva Gesteira ◽  
Mathieu Paoli ◽  
...  

The cosmetic and fragrance industry largely exploits citrus essential oils (EOs) because of their aromatic properties. EO compositions are complex and differ between fruit pericarp (PEO) and leaf (LEO). Citrus fruit grow in many countries under very different climates. Seventeen citrus cultivars were selected and their similarities between the two collections were verified by SSR (Single Sequence Repeat) and InDel (Insertion and Deletion) markers to assess the effects of the environment and cultivation practices on the EO yield and composition. LEOs and PEOs were extracted by water distillation and analyzed by GC-MS. PEO yields were generally higher in Corsica than in Bahia, especially in the citron family. PEOs in this family were richer in limonene in Bahia than in Corsica while, conversely, neral, geranial and derivatives were present in a higher proportion in Corsican varieties. A few minor components were site-specific, such as nookaton, a pummelo-specific compound that was not present in grapefruit cultivated in Bahia. If climate change over the last 20 years has not affected the PEO composition in Corsica, the contrasted environmental conditions and cultural practices between Bahia and Corsica could possibly explain the EO variations.


2016 ◽  
Vol 54 (2) ◽  
pp. 178
Author(s):  
Dinh Thi Phong ◽  
Vu Thi Thu Hien ◽  
Tran Thi Lieu ◽  
Nguyen Tien Hiep

Pinus dalatensis Ferre’(Family: Pinaceae) is an endemic plant with restricted habitats at higher altitudes in Vietnam highland. The species are now near threatened by over-exploitation and habitat destruction. The genetic variation within and among populations of P. dalatensis was investigated by 41 microsatellite (single sequence repeat, SSR) primers, but only 11 SSR primers showed polymorphism bands. In all, 70 sampled trees from six populations in Vietnam highland were analyzed in this study, samples were collected from populations located in different altitude. A total of 40 allelic variants have been detected. The mean number of alleles per locus was 2.197. The SSR data showed a genetic diversity parameters within populations with an average of I = 0.524, Ho = 0.222, He = 0.317, Fis =0.333 and Ap = 0.106. The number private alleles (Ap) was only found in four populations, the Hoa Son population showed the highest (0.273), followed by Da Chay (0.182), and value of 0.091 for all Ngoc Linh and A Yun. Analysis of molecular variance analysis showed that most genetic variation was within populations of 57.504 % and among population of 42.496 %. The population pairwise differentiations indicated that most of the populations were significantly differentiated p < 0.001 with Fst values ranged from 0.195 to 0.418. This study highlights the importance of conserving the genetic resources of P. dalatensis species


2016 ◽  
Vol 15 (2) ◽  
Author(s):  
D.M. Silva ◽  
M.V.B.M. Siqueira ◽  
N.F. Carrasco ◽  
C.C. Mantello ◽  
W.F. Nascimento ◽  
...  

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