Abstract
BackgroundOllier disease (OD) is a kind of rare and non-hereditary orthopaedics disease. The malignancy transformation towards chondrosarcoma can cause catastrophic consequences. Our study aimed to reveal the potential molecule mechanism and hub genes involving in Ollier chondrosarcomas. The raw data GSE30835 was acquired from Gene Expression Omnibus (GEO). Differentially expressed genes (DEGs) between Ollier chondrosarcoma and healthy groups were identified. After Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of DEGs, protein-protein interaction (PPI) network construction, hub genes and significant modules were selected. CIBERSORT analysis was also carried out.ResultsTogether, 226 DEGs were identified, which contained 79 downregulated and 147 up-regulated. Functional and pathway enrichment analysis indicated that DEGs were mainly enriched in extracellular matrix (ECM) structural constituent, MHC class II antigen-related mechanism and phagosome pathway. Two significant modules were related to chondrocyte development, MHC class II antigen processing and presentation. COL3A1, VCAN, COL11A1, THBS1, ITGB1, CCL2, CCND1 were viewed as hub genes. CIBERSORT analysis shows that naive B cells and M0 macrophages are of statistical significance. ConclusionOur study suggests that COL3A1, COL11A1, VCAN, ITGB1, THBS1, CCL2, CCND1 may be viewed as promising candidate biomarkers of Ollier chondrosarcoma. We also advanced that MHC class II antigen-related immune mechanism should be paid attention in the further experiment. Naive B cells and M0 macrophages might be related to immune mechanism.