Distribution and Assembly Processes of Soil Fungal Communities along an Altitudinal Gradient in Tibetan Plateau

In soil ecosystems, fungi exhibit diverse biodiversity and play an essential role in soil biogeochemical cycling. Fungal diversity and assembly processes across soil strata along altitudinal gradients are still unclear. In this study, we investigated the structure and abundance of soil fungal communities among soil strata and elevational gradients on the Tibetan Plateau using Illumina MiSeq sequencing of internal transcribed spacer1 (ITS1). The contribution of neutral and niche ecological processes were quantified using a neutral community model and a null model-based methodology. Our results showed that fungal gene abundance increased along altitudinal gradients, while decreasing across soil strata. Along with altitudinal gradients, fungal α-diversity (richness) decreased from surface to deeper soil layers, while β-diversity showed weak correlations with elevations. The neutral community model showed an excellent fit for neutral processes and the lowest migration rate (R2 = 0.75). The null model showed that stochastic processes dominate in all samples (95.55%), dispersal limitations were dominated at the surface layer and decreased significantly with soil strata, while undominated processes (ecological drift) show a contrary trend. The log-normal model and the null model (βNTI) correlation analysis also neglect the role of niche-based processes. We conclude that stochastic dispersal limitations, together with ecological drifts, drive fungal communities.

Why is the rainforest lichen Methuselah’s Beard (Usnea longissima) so rare in British Columbia’s inland temperate rainforest?

Coastal (CTR) and inland temperate rainforests (ITR) in western North America share a rich oceanic lichen flora. The distinctive Methuselah’s beard lichen (Usnea longissima) is an exception to this pattern of shared distributions, with very few ITR locations. Does this absence reflect dispersal limitations or climatic intolerance? To answer this question, we transplanted U. longissima thalli from the CTR to three ITR locations, assessing growth rates against reciprocal CTR transplants. Canopy microclimate measurements provided concurrent data on growth conditions. Growth rate responses (length, mass and area) were evaluated after summer and full-year transplants. Notwithstanding extended drought conditions during the summer period, annual transplants at two of the three ITR locations supported growth rates comparable to those at the CTR source U. longissima population, with summer dewfall and autumn rains being major ITR hydration sources. Thalli transplanted to a third ITR site (summer measurements only) in a location transitional to the drier interior plateau lost both mass and length. Based on these findings we suggest that the absence of U. longissima from much of the ITR reflects the combined influence of dispersal limitations and requirements for stands with long site continuity and topographically induced summer wetting of thalli by dewfall.

Co-invading ectomycorrhizal fungal succession in pine-invaded mountain grasslands

Pines (Pinus spp.) rely on co-introduced ectomycorrhizal (EM) fungi to invade native ecosystems in the Southern Hemisphere. Although co-invasive EM fungal communities are expected to be poor in species, long-term successional trajectories and the persistence of dispersal limitations are not well understood. We sampled the roots and surrounding soil of Pinus elliottii and P. taeda trees invading mountain grasslands of Argentina. We also sampled the EM fungal spore bank in grassland soil near (~150 m) and far (~850 m) from original pine plantations. We found an impressive total of 47 different co-invasive EM fungal OTUs. Differential dispersal capacities among EM fungi were detected in the spore bank of grassland soil, but not under mature invading pines. After thirty years of invasion, the age but not the degree of spatial isolation of pine individuals affected the EM fungal composition. We showed that invading pines can host a highly diverse EM fungal community and although dispersal limitations can be important during the colonization of non-invaded sites, they can be overcome in the life-span of pines, allowing EM succession to continue. These results enhance our understanding of the spatial structure and dispersal dynamics of EM fungi during pine invasions.

Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi

ABSTRACT Bacteria–fungi interactions (BFIs) are essential in ecosystem functioning. These interactions are modulated not only by local nutritional conditions but also by the physicochemical constraints and 3D structure of the environmental niche. In soils, the unsaturated and complex nature of the substrate restricts the dispersal and activity of bacteria. Under unsaturated conditions, some bacteria engage with filamentous fungi in an interaction (fungal highways) in which they use fungal hyphae to disperse. Based on a previous experimental device to enrich pairs of organisms engaging in this interaction in soils, we present here the design and validation of a modified version of this sampling system constructed using additive printing. The 3D printed devices were tested using a novel application in which a target fungus, the common coprophilous fungus Coprinopsis cinerea, was used as bait to recruit and identify bacterial partners using its mycelium for dispersal. Bacteria of the genera Pseudomonas, Sphingobacterium and Stenotrophomonas were highly enriched in association with C. cinerea. Developing and producing these new easy-to-use tools to investigate how bacteria overcome dispersal limitations in cooperation with fungi is important to unravel the mechanisms by which BFIs affect processes at an ecosystem scale in soils and other unsaturated environments.

Islands in the sand: are all hypolithic microbial communities the same?

ABSTRACT Hypolithic microbial communities (hypolithons) are complex assemblages of phototrophic and heterotrophic organisms associated with the ventral surfaces of translucent minerals embedded in soil surfaces. Past studies on the assembly, structure and function of hypolithic communities have tended to use composite samples (i.e. bulked hypolithic biomass) with the underlying assumption that samples collected from within a ‘homogeneous’ locality are phylogenetically homogeneous. In this study, we question this assumption by analysing the prokaryote phylogenetic diversity of multiple individual hypolithons: i.e. asking the seemingly simple question of ‘Are all hypolithons the same’? Using 16S rRNA gene-based phylogenetic analysis of hypolithons recovered for a localized moraine region in the Taylor Valley, McMurdo Dry Valleys, Antarctica, we demonstrate that these communities are heterogeneous at very small spatial scales (<5 m). Using null models of phylogenetic turnover, we showed that this heterogeneity between hypolithons is probably due to stochastic effects such as dispersal limitations, which is entirely consistent with the physically isolated nature of the hypolithic communities (‘islands in the sand’) and the almost complete absence of a liquid continuum as a mode of microbial transport between communities.

At each site its diversity: DNA barcoding reveals remarkable earthworm diversity in neotropical rainforests of French Guiana

Despite their recognized essential role in soil, earthworms in tropical environments are still understudied. The aim of this study was to re-evaluate the diversity at the regional scale, as well as to investigate the environmental and spatial drivers of earthworm communities. We sampled earthworm communities across a range of habitats at six locations in French Guiana using three different sampling methods. We generated 1675 DNA barcodes and combined them with data from a previous study. Together, all sequences clustered into 119 MOTUs which were used as proxy to assess species richness. Only two MOTUs were common between the six locations and 20.2 % were singletons, showing very high regional species richness and a high number of rare species. A canonical redundancy analysis was used to identify key drivers of the earthworm community composition. The RDA results and beta-diversity calculations both show strong species turnover and a strong spatial effect, resulting from dispersal limitations that are responsible for the current community composition. Sampling in different microhabitats allowed the discovery of 23 MOTUs that are exclusively found in decaying trunks and epiphytes, highlighting hidden diversity of earthworms outside of soil.

Dispersal potential in two restricted and five wide-ranging Senecio (Asteraceae) taxa from central eastern New South Wales, Australia

Knowledge on how life history traits affect distribution in range-restricted and endemic plants is paramount for conservation and management, particularly for threatened species. Traits relating to dispersal ability are important in the ongoing persistence of range restricted species and may present a pathway to extinction or invasion. This is evident in the highly diverse and cosmopolitan genus Senecio (Asteraceae), where both threatened and invasive species occur within Australia. In this study, propagule geometry, settling velocity and dispersal potential for two range-restricted and threatened native taxa (S. linearifolious var. dangarensis Belcher ex I.Thomps., S. spathulatus var. attenuatus I.Thomps.) are contrasted with four native taxa that occupy wider ranges (S. amygdalifolius F.Muell., S. l. var. arachnoideus I.Thomps., S. l. var. macrodontus (DC.) I.Thomps., S. pinnatifolius A.Rich. var. pinnatifolius) and one introduced, wide-ranging species (S. madagascariensis Poir.). Differences were found in settling velocity and propagule morphology across all taxa. Based on propagule morphology, S. amygdalifolius has the greatest dispersal potential, S. spathulatus var. attenuatus the smallest, whereas all other taxa were similar. Although useful, dispersal potential alone does not fully explain distributional differences between all range-restricted and widespread taxa, and close assessment of habitat attributes may be required to further elucidate dispersal limitations in some taxa.