Fish functional diversity as an indicator of resilience to industrial fishing in Patagonia Argentina

The relationship between fish functional diversity and fishing levels at which its baselines shift is important to identify the consequences of fishing in ecosystem functioning. For the first time, we implemented a trait-based approach in the Argentine Patagonian sea to identify the vulnerability and spatiotemporal changes in functional diversity of fish assemblages bycatch by a trawling fleet targeting the Argentine red shrimp Pleoticus muelleri (Spence Bate, 1888) between 2003 and 2014. We coupled seven fish trophic traits to a reconstructed fish assemblage for the study area and bycatch and evaluated changes in fish species richness and four complementary functional diversity metrics [functional richness, redundancy, dispersion, and community trait values] along with fishing intensity, temporal use, latitudinal location, and depth of fishing grounds. Resident fishes larger than 30 cm in TL, with depressed and fusiform bodies, intermediate to high trophic levels, and feeding in shallow benthic, benthodemersal, and benthopelagic areas were vulnerable to bycatch. Fish assemblages exhibited a low functional trait redundancy, likely related to species influxes in a biogeographic ecotone with tropicalisation signs. Significantly increases in fish trait richness and dispersion polewards and with depth suggested new functional roles in these grounds, matching trends in community body size, reproductive load, maximum depth, trophic level, and diet breadth. Finally, a temporal increase in fish species and functional trait removal in fishing grounds led to trait homogenisation since the first year of trawling. The identified tipping points in temperate fish functional trait diversity highlight trait-based approaches within ecosystem-based fisheries management.

DNA metabarcoding reveals adaptive seasonal variation of individual trophic traits in a critically endangered fish

Dietary studies are critical for understanding foraging strategies and have important applications in conservation and habitat management. We applied a robust metabarcoding protocol to characterize the diet of the critically endangered freshwater fish Zingel asper and conducted modelling and simulation analyses to characterize and identify some of the drivers of individual trophic trait variation in this species. We found that intra-specific competition and ontogeny had minor effects on the trophic niche of Z. asper. Instead, our results suggest that the majority of trophic niche variation was driven by seasonal variation in ecological opportunity (in our case, the seasonal variation in the availability of preferred prey types). Overall, our results are in line with the optimal foraging theory and suggest that Z. asper is specialized on a few ephemeropteran prey species (Baetis fuscatus and Ecdyonurus) but adapts its foraging by becoming more opportunistic as its favoured prey seasonally decline. Despite the now widespread usage of metabarcoding, very few studies have attempted to study inter- and intra-populational individual trophic traits variation with metabarcoding data. This study illustrates how metabarcoding data obtained from feces can be combined with modelling and simulation approaches to test hypotheses in the conventional analytic framework of trophic analysis.

Nonadaptive radiation of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes with minor shifts for scale-eating

Adaptive radiations offer an excellent opportunity to understand the eco-evolutionary dynamics of gut microbiota and host niche specialization. In a laboratory common garden, we compared the gut microbiota of two novel trophic specialists, a scale-eater and a molluscivore, to a set of four outgroup generalist populations from which this adaptive radiation originated. We predicted an adaptive and highly divergent microbiome composition in the specialists matching their rapid rates of craniofacial diversification in the past 10 kya. We measured gut lengths and sequenced 16S rRNA amplicons of gut microbiomes from lab-reared fish fed the same high protein diet for one month. In contrast to our predictions, gut microbiota largely reflected 5 Mya phylogenetic divergence times among generalist populations in support of phylosymbiosis. However, we did find significant enrichment of Burkholderiaceae bacteria in both lab-reared scale-eater populations. These bacteria sometimes digest collagen, the major component of fish scales, supporting an adaptive shift. We also found some enrichment of Rhodobacteraceae and Planctomycetacia in lab-reared molluscivore populations, but these bacteria target cellulose. Minor shifts in gut microbiota appear adaptive for scale-eating in this radiation, whereas overall microbiome composition was phylogenetically conserved. This contrasts with predictions of adaptive radiation theory and observations of rapid diversification in all other trophic traits in these hosts, including craniofacial morphology, foraging behavior, aggression, and gene expression, suggesting that microbiome divergence proceeds as a nonadaptive radiation.

Nonadaptive radiation of the gut microbiome in an adaptive radiation of Cyprinodon pupfishes with minor shifts for scale-eating

Adaptive radiations offer an excellent opportunity to understand the eco-evolutionary dynamics of gut microbiota and host niche specialization. In a laboratory common garden, we compared the gut microbiota of two novel trophic specialists, a scale-eater and a molluscivore, to a set of four outgroup generalist populations from which this adaptive radiation originated. We predicted an adaptive and highly divergent microbiome composition in the specialists matching their rapid rates of craniofacial diversification in the past 10 kya. We measured gut lengths and sequenced 16S rRNA amplicons of gut microbiomes from lab-reared fish fed the same high protein diet for one month. In contrast to our predictions, gut microbiota largely reflected 5 Mya phylogenetic divergence times among generalist populations in support of phylosymbiosis. However, we did find significant enrichment of Burkholderiaceae bacteria in both lab-reared scale-eater populations. These bacteria sometimes digest collagen, the major component of fish scales, supporting an adaptive shift. We also found some enrichment of Rhodobacteraceae and Planctomycetacia in lab-reared molluscivore populations, but these bacteria target cellulose. Minor shifts in gut microbiota appear adaptive for scale-eating in this radiation, whereas overall microbiome composition was phylogenetically conserved. This contrasts with predictions of adaptive radiation theory and observations of rapid diversification in all other trophic traits in these hosts, including craniofacial morphology, foraging behavior, aggression, and gene expression, suggesting that microbiome divergence proceeds as a nonadaptive radiation.

Trophic Niches, Trophic Positions, and Niche Overlaps between Non-Native and Native Fish Species in a Subalpine Lake

In the last century, Italian freshwater ecosystems have been invaded by several non-native fish species. In the subalpine Lake Mergozzo (northern Italy), several recently introduced non-native species dramatically expanded their populations. We used carbon and nitrogen stable isotopes to describe the isotopic niches and trophic positions of native and non-native fish species in Lake Mergozzo. We evaluated their trophic niches, trophic diversity, trophic redundancy and trophic evenness utilizing isotopic niche metrics, and estimated asymmetrical niche overlaps. The trophic traits of non-native fish species and Perca fluviatilis clearly define them as trophic generalists, in terms of among-individual variability of their isotopic niches. The historical increase in abundance of fish non-native species in this lake, their dominance by numbers and biomass within the assemblage, and their broad asymmetrical niche overlaps suggest that their higher degree of trophic generalism might have been one of the key factors that have promoted the invasion of the recipient community.

Structure and function of nematode assemblages in contaminated sediments: what can we learn from the Mar Piccolo of Taranto (Ionian Sea)?

Free-living nematodes were investigated in the Mar Piccolo of Taranto (Ionian Sea), a semi-enclosed basin of strategic importance for its complex productive infrastructure but in need of remediation due to the alarming amounts of heavy metals and synthetic organic contaminants in the sediments. Abundance, genera composition, biodiversity and trophic traits of nematodes were related to the gradual transition from marine to more brackish conditions and to the varying levels of contaminants in different sub-areas of the basin. Nematodes were more abundant and diverse at the most marine site while low numbers and diversity characterized the most contaminated station. Going towards the innermost part of the basin, gradually increasing values of abundance and biodiversity were observed although the assemblage was susceptible to the organic enrichment caused by mussel farms. The use of nematodes as ecological indicators mirrored the response of the assemblage to the main patterns acting in the basin (High/Good scores at the most marine site and Poor/Bad scores at the most contaminated station), giving a clear indication of environmental quality to stakeholders/authority that can contribute to address remediation actions in contaminated sediments.

Trophic traits of Grammostola vachoni, a tarantula (Araneae : Theraphosidae) from Argentina

This is the first study about trophic traits of Grammostola vachoni, a threatened theraphosid spider endemic to the mountain systems of central Argentina. Four prey types were used in experiments: crickets, cockroaches, beetle larvae and adult beetles. Grammostola vachoni was observed to eat at a rate of about once every 11 days, with the mean total number of prey consumed per spider during the experimental period being 2.7. Latency to the first attack was similar for crickets, cockroaches and beetle larvae, but was shorter for adult beetles. Feeding time was significantly longer for crickets and beetle larvae. Mass gain was significantly different among prey types. Feeding effectiveness and ingestion rate were significantly higher for crickets. A significant positive correlation for feeding effectiveness and ingestion rate with prey mass and the initial spider mass was also found.