From DNA to biomass: opportunities and challenges in species quantification of bulk fisheries products

Fisheries enforcement relies on visual catch identification and quantification at sea or when landed. Silage (fish dissolved in acid) and fish blocks (block frozen fish) are promising methods for on-board processing and storage of low-value catches. We examined the use of non-destructive sampling and two DNA-based methods, quantitative PCR (qPCR) and metabarcoding, to assess species composition and relative abundance in industrial grade experimental silage and fish blocks. We demonstrate the ability to identify and quantify DNA from fish species in both products. qPCR analysis of small silage samples collected over 21 days detected all target control species. DNA from one species (Atlantic wolffish) was consistently overrepresented while, for three species of gadoids (Atlantic cod, haddock and whiting), the DNA content matched input tissue proportions with high accuracy. qPCR and metabarcoding of fish blocks, sampled as run-off water and exterior swabs, provided consistent species detection, with the highest variance observed in quantification from swab samples. Our analysis shows that DNA-based methods have significant potential as a tool for species identification and quantification of complex on-board-processed seafood products and are readily applicable to taxonomically and morphologically similar fish. There is, however, a need for establishing DNA/weight calibration factors for primary fisheries species.

High occurrence rate of xanthomatosis and nephrocalcinosis in aquarium-housed Atlantic wolffish Anarhichas lupus and spotted wolffish A. minor

The Atlantic wolffish (AW) and the spotted wolffish (SW) are long-lived fish found in the North Atlantic and Arctic oceans and are respectively classified as special concern and threatened species, mainly due to fisheries bycatch. To better understand health issues associated with the care of these species in public aquaria, reports from all necropsies performed in 2 zoological institutions between 2009 and 2019 were reviewed (31 AW and 8 SW). These wolffish were fed with a similar fish-based diet and kept in multi-species exhibits with comparable environmental parameters. The most frequent necropsy findings were the presence of xanthomas (AW: 41.9%; SW: 75.0%), nephrocalcinosis (AW: 42.9%; SW: 75.0%) and urocystoliths (AW: 6.5%; SW: 62.5%). Xanthomas were mostly located at the base of pectoral fins and were characterized by extensive granulomatous inflammation centered on accumulations of partly mineralized degenerate fatty material, mainly composed of cholesterol crystals. Nephrocalcinosis was characterized by the deposition of calcium salts within the renal tubules and was commonly associated with tubular necrosis. The aquarium-housed wolffish were fed a coldwater fish-based diet. However, the natural diet of wolffish is composed mostly of invertebrates such as urchins and crustaceans. Differences in nutrient composition between these diets, such as lipid and mineral content, may have contributed to the development of xanthomatosis, nephrocalcinosis and urocystolithiasis in wolffish housed in these institutions.

High-resolution seafloor mapping to describe coastal denning habitat of a Canadian species at risk: Atlantic wolffish (Anarhichas lupus)

The Atlantic wolffish (Anarhichas lupus) is listed by Canada’s Species at Risk Act as a species of special concern. Effective conservation strategies rely on accurate knowledge of habitat requirements, distribution, and vulnerabilities; however, current management plans cite lack of wolffish habitat data as a key limitation. For this study, coastal Atlantic wolffish denning habitat was characterized and mapped with high-resolution multibeam data and seafloor video in Conception Bay, Newfoundland. Four Atlantic wolffish dens, used for feeding, spawning, and egg-guarding, were surveyed and mapped. On the basis of the geomorphology and substrate of these dens, a supervised classification was applied to the multibeam bathymetry and backscatter data to identify other potential denning areas. Predicted denning habitat, limited by the occurrence of suitable rocky substrate, is most prevalent in shallow waters (<22 m) distributed over 1.6 km2 (5.9%) of the study area. Shallow denning habitat is exposed to seasonal maximum temperatures that exceed the threshold for normal Atlantic wolffish egg development, a potential vulnerability for nearshore wolffish. As management efforts progress, this information will guide research and prioritization of conservation areas.