Adaption to the energy substrates and heavy metals by bioleaching micoorganisms is the prerequisite for efficient microbe-mineral interaction in bioleaching process. It is known extracellular polymer substances (EPSs) take important role in mediating the adaption to and action on energy substrates and heavy metals. This report presents the evolution of compositions and contents of the major components of EPSs of the typical bioleaching microorganisms (Acidithiobacillus ferrooxidans, Leptospirillum ferriphilum, Sulfobacillus thermosulfidooxidans, and Acidianus manzaensis,) exposed to different energy substrates and heavy metal ions. These strains were acclimated firstly to Fe2+ substrate, and then on the substrates elemental sulfur (S0), pyrite and chalcopyrite, respectively. It was found that the major components of capsule and slime EPSs in terms of proteins, polysaccharides, as well as uronic acids were quite different in contents for the Fe2+-acclimated strains, and they even changed more when the Fe2+-acclimated strains were further acclimated to the other substrates. When exposed to heavy metals, all strains demonstrated much decrease in contents of capsule EPSs, and much increase in slime EPSs contents and the heavy metals were found to bound to the slime parts. It was for the first time the EPSs of the bioleaching strains were fractionated into capsule part and slime part, and it was also for the first time we found the differences in evolution of compositions and contents of the major organic components as well as the inorganic matter of capsule EPSs and slime EPSs when the bioleaching strains were exposed to different energy substrates and heavy metals.