Electron Transfer and Charge Transport Processes in DNA

2008 ◽  
pp. 105-175 ◽  
Author(s):  
Frederick D. Lewis
2017 ◽  
Vol 8 (4) ◽  
pp. 2597-2609 ◽  
Author(s):  
Kenley M. Pelzer ◽  
Álvaro Vázquez-Mayagoitia ◽  
Laura E. Ratcliff ◽  
Sergei Tretiak ◽  
Raymond A. Bair ◽  
...  

Using ab initio calculations of charges in PCBM fullerenes, a multiscale approach applies classical molecular dynamics to model charge transfer.


A comprehensive survey on experimental techniques, results and theoretical interpretations concerning the self-dissociation and protonic charge transport in water and ice is given. Recent investigations of fast protolytic reactions in pure water and aqueous solutions by means of relaxation techniques complete our knowledge about state and kinetic properties of the proton in this medium. In comparison here with our experience regarding the same properties in ice crystals are far less complete, as usual techniques of aqueous solutions are not applicable. Direct measurements of individual properties of ‘excess’ and ‘defect’ protons in ice (mobilities, concentrations, reaction rates) are presented. The proton transport in hydrogen-bonded media is completely different from normal ionic migration and corresponds more to electronic transport processes in semi-conductors. Generally the proton transport through hydrogen bonds includes two processes: (1) The formation (or rearrangement) of (H-bond) structure with orientation, favourable for a proton transition, and (2) the charge transfer within the H bond. The first step is rate determining in water, whereas the second one is decisive for the charge transport in ice. The requirements for a theoretical treatment therefore are (1) for water: a theory of ‘structural diffusion’ of the H-bonded hydration complex of H 3 O + , and (2) for ice: a (quantum-mechanical) theory of the protonic motion within the potential well of the H bond. The mechanism of structural diffusion provides an explanation of the anomalous H 3 O + and OH - mobility and their recombination rate in water. The difference between protonic and normal ionic charge transport occurs most obviously in the absolute values of mobilities in ice. The proton mobility in ice differs by many orders of magnitude from that of normal ions, but only by a factor of about 50 from electronic mobilities in some metals and semi-conductors. Further arguments, demonstrating the analogy between protonic and electronic charge transport are given. The reaction kinetics of protolytic systems and the fast proton transport in H-bonded systems are of certain importance with respect to biological problems.


2019 ◽  
Vol 123 (51) ◽  
pp. 30791-30798
Author(s):  
Chuan-Hui Cheng ◽  
Bi-Long Zhang ◽  
Hang-Qi Song ◽  
Yuan Wang ◽  
Wen-Hui Li ◽  
...  

1996 ◽  
Vol 63 (4) ◽  
pp. 315-321 ◽  
Author(s):  
U. van Stevendaal ◽  
K. Buse ◽  
S. Kämper ◽  
H. Hesse ◽  
E. Krätzig

2001 ◽  
Vol 79 (4) ◽  
pp. 517-524 ◽  
Author(s):  
Jonathan C Parrish ◽  
J Guy Guillemette ◽  
Carmichael JA Wallace

Cytochrome c is a small electron-transport protein whose major role is to transfer electrons between complex III (cytochrome reductase) and complex IV (cytochrome c oxidase) in the inner mitochondrial membrane of eukaryotes. Cytochrome c is used as a model for the examination of protein folding and structure and for the study of biological electron-transport processes. Amongst 96 cytochrome c sequences, residue 85 is generally conserved as either isoleucine or leucine. Spatially, the side chain is associated closely with that of the invariant residue Phe82, and this interaction may be important for optimal cytochrome c activity. The functional role of residue 85 has been examined using six site-directed mutants of Saccharomyces cerevisiae iso-1 cytochrome c, including, for the first time, kinetic data for electron transfer with the principle physiological partners. Results indicate two likely roles for the residue: first, heme crevice resistance to ligand exchange, sensitive to both the hydrophobicity and volume of the side chain; second, modulation of electron-transport activity through maintenance of the hydrophobic character of the protein in the vicinity of Phe82 and the exposed heme edge, and possibly of the ability of this region to facilitate redox-linked conformational change.Key words: protein engineering, cytochrome c, structure-function relations, electron transfer, hydrophobic packing.


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