scholarly journals Kinetic modeling of microbial growth, enzyme activity, and gene deletions: An integrated model of β‐glucosidase function in Cellvibrio japonicus

2020 ◽  
Vol 117 (12) ◽  
pp. 3876-3890
Author(s):  
Jeanice Hwang ◽  
Archana Hari ◽  
Raymond Cheng ◽  
Jeffrey G. Gardner ◽  
Daniel Lobo

1998 ◽  
Vol 33 (3) ◽  
pp. 405-424
Author(s):  
Chunlong Zhang ◽  
Kalliat T. Valsaraj ◽  
W. David Constant ◽  
Dipak Roy


2020 ◽  
Author(s):  
Jie Zhou ◽  
Yuan Wen ◽  
Lingling Shi ◽  
Michaela Dippold ◽  
Yakov Kuzyakov ◽  
...  

<p>The Paris climate agreement is pursuing efforts to limit the increase in global temperature to below 2 °C above pre-industrial level. The overall consequence of relatively slight warming (~2 °C), on soil C and N stocks will be dependent on microorganisms decomposing organic matter through release of extracellular enzymes. Therefore, the capacity of soil microbial community to buffer climate warming in long-term and the self-regulatory mechanisms mediating soil C and N cycling through enzyme activity and microbial growth require a detailed comparative study. Here, microbial growth and the dynamics of enzyme activity (involved in C and N cycling) in response to 8 years warming (ambient, +1.6 °C, +3.2 °C) were investigated to identify shifts in soil and microbial functioning. A slight temperature increase (+1.6 °C) only altered microbial properties, but had no effect on either hydrolytic enzyme activity or basic soil properties. Stronger warming (+3.2 °C) increased the specific growth rate (μ<sub>m</sub>) of the microbial community, indicating an alteration in their ecological strategy, i.e. a shift towards fast-growing microorganisms and accelerated microbial turnover. Warming strongly changed microbial physiological state, as indicated by a 1.4-fold increase in the fraction of growing microorganisms (GMB) and 2 times decrease in lag-time with warming. This reduced total microbial biomass but increased specific enzyme activity to be ready to decompose increased rhizodeposition, as supported by the higher potential activitiy (V<sub>max</sub>) and lower affinity to substrates (higher K<sub>m</sub>) of enzymes hydrolyzing cellobiose and proteins cleavage in warmed soil. In other words, stronger warming magnitude (+3.2 °C) changed microbial communities, and was sufficient to benefit fast-growing microbial populations with enzyme functions that specific to degrade labile SOM. Combining with 48 literature observations, we confirmed that the slight magnitude of temperature increase (< 2 °C) only altered microbial properties, but further temperature increases (2-4 °C) was sufficient to change almost all soil, microbial, and enzyme properties and related processes. As a consequence, the revealed microbial regulatory mechanism of stability of soil C storage is strongly depended on the magnitude of future climate warming.</p>



2017 ◽  
Vol 37 ◽  
pp. 144-149 ◽  
Author(s):  
Guoping Huang ◽  
Suwan Chen ◽  
Chunhua Dai ◽  
Ling Sun ◽  
Wenli Sun ◽  
...  






2016 ◽  
Vol 97 (3) ◽  
pp. 770-776 ◽  
Author(s):  
Adriana Hurtado ◽  
Maria Dolors Guàrdia ◽  
Pierre Picouet ◽  
Anna Jofré ◽  
José María Ros ◽  
...  


2015 ◽  
Vol 81 (17) ◽  
pp. 5968-5975 ◽  
Author(s):  
Cassandra E. Nelson ◽  
Jeffrey G. Gardner

ABSTRACTThe depolymerization of the recalcitrant polysaccharides found in lignocellulose has become an area of intense interest due to the role of this process in global carbon cycling, human gut microbiome nutritional contributions, and bioenergy production. However, underdeveloped genetic tools have hampered study of bacterial lignocellulose degradation, especially outside model organisms. In this report, we describe an in-frame deletion strategy for the Gram-negative lignocellulose-degrading bacteriumCellvibrio japonicus. This method leverages optimized growth conditions for conjugation andsacBcounterselection for the generation of markerless in-frame deletions. This method produces mutants in as few as 8 days and allows for the ability to make multiple gene deletions per strain. It is also possible to remove large sections of the genome, as shown in this report with the deletion of the nine-gene (9.4-kb)gspoperon inC. japonicus.We applied this system to study the complex phenotypes of cellulose degradation inC. japonicus. Our data indicated that a Δcel5BΔcel6Adouble mutant is crippled for cellulose utilization, more so than by either single mutation alone. Additionally, we deleted individual genes in the two-genecbp2EDoperon and showed that both genes contribute to cellulose degradation inC. japonicus. Overall, these described techniques substantially enhance the utility ofC. japonicusas a model system to study lignocellulose degradation.





2018 ◽  
Vol 55 (11) ◽  
pp. 4492-4504 ◽  
Author(s):  
Omer N. Alsawmahi ◽  
Fahad Y. Al-Juhaimi ◽  
Abdullah M. Alhamdan ◽  
Kashif Ghafoor ◽  
Isam A. Mohamed Ahmed ◽  
...  


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