Dengue Virus Purification and Sample Preparation for Cryo-Electron Microscopy

Author(s):  
Joanne L. Tan ◽  
Shee Mei Lok
Lab on a Chip ◽  
2019 ◽  
Vol 19 (8) ◽  
pp. 1378-1385 ◽  
Author(s):  
Dariush Ashtiani ◽  
Alex de Marco ◽  
Adrian Neild

Surface acoustic wave (SAW) atomisation is investigated in the context of cryo electron microscopy grid preparation. Here, the primary requirements are a reproducible and narrow plume of droplets delivering a low fluid flow rate.


2016 ◽  
Author(s):  
Guimei Yu ◽  
Kunpeng Li ◽  
Pengwei Huang ◽  
Xi Jiang ◽  
Wen Jiang

AbstractThe affinity cryo-electron microscopy (cryo-EM) approach has been explored in recent years to simplify and improve the sample preparation for cryo-EM. Despite the demonstrated successes for low-concentration and unpurified specimens, the lack of near-atomic structures using this approach has led to a common perception of affinity cryo-EM as a niche technique incapable of reaching high resolutions. Here, we report a ~2.6 Å structure solved using the antibody-based affinity grid approach with a Tulane virus sample of low concentration. This is the first near-atomic structure solved using the affinity cryo-EM approach. Quantitative analyses of the structure indicate data and reconstruction quality comparable to conventional grid preparation method using samples at high concentration. With the shifting of bottlenecks of cryo-EM structural studies to sample grid preparation, our demonstration of the sub-3 Å capability of affinity cryo-EM approach indicates its potential in revolutionizing cryo-EM sample preparation for a broader spectrum of specimens.


Methods ◽  
2016 ◽  
Vol 100 ◽  
pp. 3-15 ◽  
Author(s):  
Rebecca F. Thompson ◽  
Matt Walker ◽  
C. Alistair Siebert ◽  
Stephen P. Muench ◽  
Neil A. Ranson

Author(s):  
Wei Zhang ◽  
Paul R Chipman ◽  
Jeroen Corver ◽  
Peter R Johnson ◽  
Ying Zhang ◽  
...  

2020 ◽  
Author(s):  
Xiaojun Huang ◽  
Lei Zhang ◽  
Zuoling Wen ◽  
Hui Chen ◽  
Shuoguo Li ◽  
...  

ABSTRACTCryo-electron microscopy (cryoEM) has become one of the most important approach for structural biology. However, barriers are still there for an increase successful rate, a better resolution and improved efficiency from sample preparation, data collection to image processing. CryoEM sample preparation is one of the bottlenecks with many efforts made recently, including the optimization of supporting substrate (e.g. ultra-thin carbon, graphene, pure gold, 2d crystal of streptavidin, and affinity modification), which was aimed to solve air-water interface problem, or reduce beam induced motion (BIM), or change particle distribution in the grid hole. Here, we report another effort of developing a new supporting substrate, the amorphous nickel-titanium alloy (ANTA) film, for cryoEM sample preparation. Our investigations showed advantages of ANTA film in comparison with conventional carbon film, including superior electron conductivity and trace non-specific interaction with protein. These advantages yield less BIM and significantly improved particle distribution during cryoEM experiment of human apo-ferritn, thus resulting an improved reconstruction resolution from a reduced number of micrographs and particles. Unlike the pure gold film, the usage of the ANTA film is just same with the carbon film, compatible to conventional automatic cryoEM data collection procedure.


2017 ◽  
Author(s):  
Eveline Ultee ◽  
Fred Schenkel ◽  
Wen Yang ◽  
Susanne Brenzinger ◽  
Jamie S. Depelteau ◽  
...  

AbstractThe field of cryo-electron microscopy is a rapidly growing method in structural biology. With this development, access to cryo-EM facilities becomes a bottleneck that results in long wait times between sample preparation and data acquisition. To improve sample storage, we developed a cryo-storage system with a more efficient and larger storage capacity that enables cryo-sample storage in a highly organized manner. This system is simple to use, cost-effective and easily adaptable for any type of grid box and storage dewar and any size cryo-EM laboratory.


2014 ◽  
Vol 24 (11) ◽  
pp. 115001 ◽  
Author(s):  
Zonghuan Lu ◽  
David Barnard ◽  
Tanvir R Shaikh ◽  
Xing Meng ◽  
Carmen A Mannella ◽  
...  

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