scholarly journals Experiments on Computer Assisted Optimization of the Escherichia Coli Fermentation Process Using Optferm

Author(s):  
Tânia Teixeira ◽  
Sérgio Deusdado
1999 ◽  
Vol 10 (4) ◽  
pp. 1133-1146 ◽  
Author(s):  
Renate Lux ◽  
V. Ranjit N. Munasinghe ◽  
Fred Castellano ◽  
Joseph W. Lengeler ◽  
John E. T. Corrie ◽  
...  

Chemotaxis of Escherichia coli toward phosphotransferase systems (PTSs)–carbohydrates requires phosphoenolpyruvate-dependent PTSs as well as the chemotaxis response regulator CheY and its kinase, CheA. Responses initiated by flash photorelease of a PTS substrates d-glucose and its nonmetabolizable analog methyl α-d-glucopyranoside were measured with 33-ms time resolution using computer-assisted motion analysis. This, together with chemotactic mutants, has allowed us to map out and characterize the PTS chemotactic signal pathway. The responses were absent in mutants lacking the general PTS enzymes EI or HPr, elevated in PTS transport mutants, retarded in mutants lacking CheZ, a catalyst of CheY autodephosphorylation, and severely reduced in mutants with impaired methyl-accepting chemotaxis protein (MCP) signaling activity. Response kinetics were comparable to those triggered by MCP attractant ligands over most of the response range, the most rapid being 11.7 ± 3.1 s−1. The response threshold was <10 nM for glucose. Responses to methyl α-d-glucopyranoside had a higher threshold, commensurate with a lower PTS affinity, but were otherwise kinetically indistinguishable. These facts provide evidence for a single pathway in which the PTS chemotactic signal is relayed rapidly to MCP–CheW–CheA signaling complexes that effect subsequent amplification and slower CheY dephosphorylation. The high sensitivity indicates that this signal is generated by transport-induced dephosphorylation of the PTS rather than phosphoenolpyruvate consumption.


1995 ◽  
Vol 28 (3) ◽  
pp. 142-147
Author(s):  
Mark R. Warnes ◽  
Jarmila Glassey ◽  
Gary A. Montague ◽  
Bo Kara

2012 ◽  
Vol 535-537 ◽  
pp. 2316-2320
Author(s):  
Ting Zhen Mu ◽  
Yan'e Luo ◽  
Dai Di Fan ◽  
Tao Zhang

Two control models, manual way and automatic way, have been compared during the fermentation process in this study. The automatic way is achieved by a fermentation controller developed by ourselves. Compared to manual way, biomass (OD600) and the production of human-like collagen (HLC) could be increases significantly, reaching to 144 and 7.12g/L respectively. Acetic acid, a key byproduct, is also lowered very obviously. Beside the production controlled by automation model was very stable, the automatic controller can regulate the feeding rate in real time and save labor force.


2020 ◽  
Vol 36 (2) ◽  
Author(s):  
Chunguang Zhao ◽  
Haitian Fang ◽  
Jing Wang ◽  
Shasha Zhang ◽  
Xiubao Zhao ◽  
...  

2014 ◽  
Vol 911 ◽  
pp. 314-321
Author(s):  
Aimi Liyana Sihab ◽  
Maisarah Ramli ◽  
Amizon Azizan

The impact of development of ionic liquids (ILs) in biochemical appliances has attracted attention from many researchers to further investigate on the potential of ILs. Use of ILs has provided an effective alternative in the conversion of source of carbohydrate in woody plant into fermentable sugar for ethanol production. To investigate how the presence of ILs affects the fermentation process, fermentation by using E. coli were conducted in different fermentation conditions with the presence of ILs. The purpose of this research is to investigate microbial growth under the presence of ILs with various parameters. Ability of E. coli to grow in facultative condition has made these bacteria suitable for this research. In this research, the growths of E. coli in the presence of ILs were observed by shaken culture method for 24 hours. The E. coli was tested to grow in 5 % v/v [0.005, 20 % v/v [0.02, and 50 % v/v [0.05 of IL concentration ratios. The three types of ILs used for this research were 1-Ethyl-3-methylimidazolium Acetate [EMIM][A, 1-Butyl-3-methylimidazolium Chloride [BMIM][Cl] and 1-Allyl-3-methylimidazolium Chloride [AMIM][Cl]. The growth patterns of E. coli were also observed during the fermentation with shaking frequency of 250 rpm, 300 rpm and 350 rpm.


Author(s):  
Ryan A. Scheel ◽  
Truong Ho ◽  
Yuki Kageyama ◽  
Jessica Masisak ◽  
Seamus McKenney ◽  
...  

Production of medium chain-length poly(3-hydroxyalkanoates) [PHA] polymers with tightly defined compositions is an important area of research to expand the application and improve the properties of these promising biobased and biodegradable materials. PHA polymers with homopolymeric or defined compositions exhibit attractive material properties such as increased flexibility and elasticity relative to poly(3-hydroxybutyrate) [PHB]; however, these polymers are difficult to biosynthesize in native PHA-producing organisms, and there is a paucity of research toward developing high-density cultivation methods while retaining compositional control. In this study, we developed and optimized a fed-batch fermentation process in a stirred tank reactor, beginning with the biosynthesis of poly(3-hydroxydecanoate) [PHD] from decanoic acid by β-oxidation deficient recombinant Escherichia coli LSBJ using glucose as a co-substrate solely for growth. Bacteria were cultured in two stages, a biomass accumulation stage (37°C, pH 7.0) with glucose as the primary carbon source and a PHA biosynthesis stage (30°C, pH 8.0) with co-feeding of glucose and a fatty acid. Through iterative optimizations of semi-defined media composition and glucose feed rate, 6.0 g of decanoic acid was converted to PHD with an 87.5% molar yield (4.54 g L–1). Stepwise increases in the amount of decanoic acid fed during the fermentation correlated with an increase in PHD, resulting in a final decanoic acid feed of 25 g converted to PHD at a yield of 89.4% (20.1 g L–1, 0.42 g L–1 h–1), at which point foaming became uncontrollable. Hexanoic acid, octanoic acid, 10-undecenoic acid, and 10-bromodecanoic acid were all individually supplemented at 20 g each and successfully polymerized with yields ranging from 66.8 to 99.0% (9.24 to 18.2 g L–1). Using this bioreactor strategy, co-fatty acid feeds of octanoic acid/decanoic acid and octanoic acid/10-azidodecanoic acid (8:2 mol ratio each) resulted in the production of their respective copolymers at nearly the same ratio and at high yield, demonstrating that these methods can be used to control PHA copolymer composition.


2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Jun Zhang ◽  
Wen Luo ◽  
Zhiyuan Wang ◽  
Xiaoyan Chen ◽  
Pengmei Lv ◽  
...  

AbstractTo develop an economically feasible fermentation process, this study designed a novel bioprocess based on the co-culture of engineered Bacillus subtilis and Escherichia coli for the co-production of extracellular D-psicose and intracellular lipase. After optimizing the co-culture bioprocess, 11.70 g/L of D-psicose along with 16.03 U/mg of lipase was obtained; the glucose and fructose were completely utilized. Hence, the conversion rate of D-psicose reached 69.54%. Compared with mono-culture, lipase activity increased by 58.24%, and D-psicose production increased by 7.08%. In addition, the co-culture bioprocess was explored through metabolomics analysis, which included 168 carboxylic acids and derivatives, 70 organooxygen compounds, 34 diazines, 32 pyridines and derivatives, 30 benzene and substituted derivatives, and other compounds. It also could be found that the relative abundance of differential metabolites in the co-culture system was significantly higher than that in the mono-culture system. Pathway analysis revealed that, tryptophan metabolism and β-alanine metabolism had the highest correlation and played an important role in the co-culture system; among them, tryptophan metabolism regulates protein synthesis and β-alanine metabolism, which is related to the formation of metabolic by-products. These results confirm that the co-cultivation of B. subtilis and E. coli can provide a novel idea for D-psicose and lipase biorefinery, and are beneficial for the discovery of valuable secondary metabolites such as turanose and morusin.


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