Concurrent evolution of nitrogenase genes and 16S rRNA in Rhizobium species and other nitrogen fixing bacteria

1985 ◽  
Vol 142 (4) ◽  
pp. 342-348 ◽  
Author(s):  
H. Hennecke ◽  
K. Kaluza ◽  
B. Th�ny ◽  
M. Fuhrmann ◽  
W. Ludwig ◽  
...  
2021 ◽  
Vol 32 ◽  
pp. 48-57
Author(s):  
О. О. Shakhovnina ◽  
O. V. Nadkernychna ◽  
V. M. Strekalov ◽  
O. P. Tymoshenko

Objective. Study the biological properties of the diazotroph Azospirillum brasilense 10/1, promising for improving the nitrogen nutrition of spring triticale and obtaining a high quality crop. Methods. A strain of nitrogen-fixing bacteria A. brasilense 10/1 isolated from washed roots of spring triticale Oberih Kharkivskyi by accumulation cultures method using Dobreiner semi-liquid nitrogen-free medium. Nitrogen-fixing microorganisms were isolated on potato agar with succinic acid by the Dryhalsky method. Potential nitrogenase activity on washed roots of spring triticale plants and nitrogen-fixing activity of azospirilla in pure culture were measured by gas chromatography. Electron microscopic studies of bacterial cells were performed by the method of negative contrast with uranyl acetate. Identification of azospirilla was carried out on the basis of the study of morphological, cultural, physiological and biochemical characteristics and using molecular genetic methods (16S rRNA sequence analysis). The nucleotide sequences were compared with the corresponding sequences from the international database GenBank NCBI using BLAST software. The sensitivity of bacteria to antibiotics and cereal seed pesticides was tested by disk diffusion method. Results. The active strain of nitrogen-fixing bacteria, identified as Azospirillum brasilense 10/1, was obtained by analytical selection methods. The identity of the sequences of 16S rRNA of A. brasilense 10/1 with reference strains of A. brasilense in the GenBank NCBI database is 99.5 % to 99.6 %. Diazotroph A. brasilense 10/1 is sensitive to cefotaxime, norfloxacin, chloramphenicol, gentamicin, erythromycin, kanamycin, furadonin, resistant to polymyxin, ampicillin, oxacillin, amoxicillin, ciprofloxacin, ceftriaxone. Vitavax 200FF and Fundazole dressers do not affect the development of A. brasilense 10/1, Maxim Star 025 FS somewhat inhibits the development of bacteria. Conclusion. The active strain of nitrogen-fixing bacteria A. brasilense 10/1 isolated from washed roots of triticale by methods of analytical selection, is a promising inoculant to increase yields and improve grain quality of this crop. A. brasilense 10/1 is deposited in the Depository of the Institute of Microbiology and Virology of the National Academy of Sciences of Ukraine under number B- 7317 and is protected by the patent of Ukraine No. 104212.


Author(s):  
T. Satyanandam ◽  
K. Babu ◽  
B. Yellamanda ◽  
K. Vijaya Kumar ◽  
G. Rosaiah ◽  
...  

Background: Legume nodulating bacteria (LNB), also known as rhizobia produce root nodules on leguminous plants where in nitrogen fixation takes place. In agriculture, this symbiotic relationship is significant as it provides nitrogenous fertilizers to the leguminous crops. Traditionally rhizobia were exclusively members of the Rhizobiaceae family in the Alphaproteobacteria class of bacteria. Several reports revealed that large number of diazotrophs have the ability to nodulate and fix atmospheric N2 in legumes in addition to rhizobia which are outside the Alphaproteobacteria class. Relatively less information is available on the genetic diversity of indigenous rhizobia nodulating blackgram cultivated in rice fallows. Hence the present study was carried out to know the diversity of symbiotic native nitrogen fixing bacteria isolated from the root nodules of blackgram grown in rice fallows using partial 16S rRNA sequencing.Methods: Nitrogen fixing microsymbionts (Rhizobium strains) from root nodules of blackgram were isolated on yeast extract mannitol agar (YEMA) medium. The pure cultures were maintained at 28±2°C for 48 h. Identification of Rhizobium isolates was done by using various tests and Morphological characterization of isolates was also done by using standard microbiological methods. The PCR amplification and sequencing of 16S rRNA gene of isolates were carried out to identify the isolates.Result: In the present study four strains of Rhizobium designated as VM-2, VM-8, VM-9 and VM-15 were isolated. Morphologically colonies of all strains are round, transparent, entire, convex and smooth. They are Gram-ve and rod shaped. Mucilage production is noticed in VM-2, VM-8 and VM-9. The 16S rRNA gene sequences revealed that the strain VM-2 showed a close relation with Rhizobium, VM-8 and VM-9 with Bradyrhizobium where as VM-15 with Achromobater. It was concluded that the symbiotic nitrogen fixing bacteria isolated from the root nodules of blackgram cultivated in rice fallows exhibited high genetic diversity. 


2014 ◽  
Vol 71 (3) ◽  
pp. 171-180 ◽  
Author(s):  
Bruno Lima Soares ◽  
Paulo Avelar Ademar Ferreira ◽  
Silvia Maria de Oliveira-Longatti ◽  
Leandro Marciano Marra ◽  
Marcia Rufini ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Luz K. Medina-Cordoba ◽  
Aroon T. Chande ◽  
Lavanya Rishishwar ◽  
Leonard W. Mayer ◽  
Lina C. Valderrama-Aguirre ◽  
...  

AbstractPrevious studies have shown the sugarcane microbiome harbors diverse plant growth promoting microorganisms, including nitrogen-fixing bacteria (diazotrophs), which can serve as biofertilizers. The genomes of 22 diazotrophs from Colombian sugarcane fields were sequenced to investigate potential biofertilizers. A genome-enabled computational phenotyping approach was developed to prioritize sugarcane associated diazotrophs according to their potential as biofertilizers. This method selects isolates that have potential for nitrogen fixation and other plant growth promoting (PGP) phenotypes while showing low risk for virulence and antibiotic resistance. Intact nitrogenase (nif) genes and operons were found in 18 of the isolates. Isolates also encode phosphate solubilization and siderophore production operons, and other PGP genes. The majority of sugarcane isolates showed uniformly low predicted virulence and antibiotic resistance compared to clinical isolates. Six strains with the highest overall genotype scores were experimentally evaluated for nitrogen fixation, phosphate solubilization, and the production of siderophores, gibberellic acid, and indole acetic acid. Results from the biochemical assays were consistent and validated computational phenotype predictions. A genotypic and phenotypic threshold was observed that separated strains by their potential for PGP versus predicted pathogenicity. Our results indicate that computational phenotyping is a promising tool for the assessment of bacteria detected in agricultural ecosystems.


PLoS ONE ◽  
2014 ◽  
Vol 9 (9) ◽  
pp. e106714 ◽  
Author(s):  
Huhe ◽  
Shinchilelt Borjigin ◽  
Yunxiang Cheng ◽  
Nobukiko Nomura ◽  
Toshiaki Nakajima ◽  
...  

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