The tetrapod ?DNA fingerprinting? M13 repeat probe reveals genetic diversity and clonal growth in quaking aspen (Populus tremuloides, Salicaceae)

1991 ◽  
Vol 175 (3-4) ◽  
pp. 115-123 ◽  
Author(s):  
S. H. Rogstad ◽  
Hilde Nybom ◽  
Barbara A. Schaal
Keyword(s):  
Genetic Diversity ◽  
Dna Fingerprinting ◽  
Populus Tremuloides ◽  
Clonal Growth ◽  
Quaking Aspen

Cytotype differences in radial increment provide novel insight into aspen reproductive ecology and stand dynamics

2015 ◽  
Vol 45 (1) ◽  
pp. 1-8 ◽  
Author(s):  
R. Justin DeRose ◽  
Karen E. Mock ◽  
James N. Long
Keyword(s):  
Genetic Diversity ◽  
Populus Tremuloides ◽  
Ring Width ◽  
Stand Development ◽  
Quaking Aspen ◽  
Radial Increment ◽  
Management Actions ◽  
Tree Ring Data ◽  
Development Processes ◽  
Insight Into

High rates of triploidy have recently been described in quaking aspen (Populus tremuloides Michx.) of the Intermountain West, raising questions about the contributions of triploidy to stand persistence and dynamics. In this study, we investigated cytotype differences between diploid and triploid aspen clones using dendrochronological techniques. We used tree-ring data collected from stems within an aspen stand near Fish Lake, Utah, to test for differences in stem age, population structure, growth, and response to climate. This stand contains the well-known Pando clone, which is purported to be the largest organism documented on earth. Our results show that triploid aspen stems grew more rapidly than diploids, and that this difference was most pronounced early in stand development. Growth response to climate varied little between triploids and diploids, where wide rings were associated with cool, moist years, and narrow rings were associated with above-average growing season temperatures. Stand development processes and inherent genetic differences are mechanisms possibly controlling the observed differences in aspen ring width between triploids and diploids. Regardless of the mechanism, the results have specific management implications. Conventional regeneration methods involving coppicing and the associated intermediate treatments will promote asexually reproducing triploids, leading to static or reduced genetic diversity. Enhanced genetic diversity will be favored by management actions that explicitly account for (i) the potential existence of multiple cytotypes within a stand and (ii) the observed differences in growth rates between diploid and triploid individuals.

Changing perspectives on regeneration ecology and genetic diversity in western quaking aspen: implications for silviculture

2012 ◽  
Vol 42 (12) ◽  
pp. 2011-2021 ◽  
Author(s):  
James N. Long ◽  
Karen Mock
Keyword(s):  
Genetic Diversity ◽  
Populus Tremuloides ◽  
Stand Development ◽  
Quaking Aspen ◽  
Conventional View ◽  
High Severity ◽  
Low Expectations ◽  
Recent Developments ◽  
Regeneration Ecology ◽  
Silvicultural Practice

A conventional view of regeneration ecology of quaking aspen ( Populus tremuloides Michx.) in western North American holds that reproduction is strictly vegetative and, except on some marginal sites, only successful following high-severity disturbance. This view has strongly influenced silvicultural treatment of western aspen and has led to low expectations concerning genetic diversity of stands and landscapes. However, recent discoveries are fundamentally altering our understanding of western aspen regeneration ecology and genetics. For example, there are clearly multiple pathways of aspen regeneration and stand development. Research on a variety of fronts indicates that seedling establishment is common enough to be ecologically important and that genetic diversity is substantially greater than previously thought. We review conventional understanding of western aspen and put this into the context of silvicultural practice. We then review recent developments in aspen research and assess the silvicultural implications of these insights.

scholarly journals Continental-scale assessment of genetic diversity and population structure in quaking aspen (Populus tremuloides )

2013 ◽  
Vol 40 (9) ◽  
pp. 1780-1791 ◽  
Author(s):  
Colin M. Callahan ◽  
Carol A. Rowe ◽  
Ronald J. Ryel ◽  
John D. Shaw ◽  
Michael D. Madritch ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Populus Tremuloides ◽  
Quaking Aspen ◽  
Continental Scale ◽  
Scale Assessment

scholarly journals Polyploidy influences plant–environment interactions in quaking aspen (Populus tremuloides Michx.)

2017 ◽  
Vol 38 (4) ◽  
pp. 630-640 ◽  
Author(s):  
Burke T Greer ◽  
Christopher Still ◽  
Grace L Cullinan ◽  
J Renée Brooks ◽  
Frederick C Meinzer
Keyword(s):  
Populus Tremuloides ◽  
Quaking Aspen ◽  
Plant Environment

Canopy and edge activity of bats in a quaking aspen (Populus tremuloides) forest

2012 ◽  
Vol 90 (7) ◽  
pp. 798-807 ◽  
Author(s):  
T.W. Pettit ◽  
K.T. Wilkins
Keyword(s):  
Populus Tremuloides ◽  
High Frequency ◽  
Regression Tree ◽  
Low Frequency ◽  
Tree Height ◽  
Quaking Aspen ◽  
Activity Levels ◽  
Forest Canopies ◽  
Bat Activity ◽  
Cart Analysis

Characteristics of edges affect the behavior of species that are active in and near edges. Forest canopies may provide edge-like habitat for bats, though bat response to edge orientation has not been well examined. We sampled bat activity in quaking aspen ( Populus tremuloides Michx.) forest canopies and edges in Heber Valley, Utah, during summer 2009 using Anabat detectors. Categorization and regression tree (CART) analysis of echolocation characteristics (e.g., frequency, duration) identified two guilds based on characteristic frequency (i.e., high- and low-frequency guilds). We used linear regression to compare characteristics of canopy and edge vegetation (e.g., tree height, diameter at breast height) to bat activity levels. Activity levels of high-frequency bats did not respond differentially to edge vegetation; low-frequency bat activity seemed to respond to canopy height. Activity levels of high-frequency bats were significantly greater than low-frequency bats in both edges and canopies. We detected significantly more bat activity in forest edges than in forest canopies, indicating the importance of edges to bats in forests.

Impact of extrafloral nectar availability and plant genotype on ant (Hymenoptera: Formicidae) visitation to quaking aspen (Salicaceae)

2015 ◽  
Vol 148 (1) ◽  
pp. 36-42 ◽  
Author(s):  
Jonathon R. Newman ◽  
Diane Wagner ◽  
Patricia Doak
Keyword(s):  
Populus Tremuloides ◽  
Late Summer ◽  
Early Summer ◽  
Quaking Aspen ◽  
Plant Genotype ◽  
Free Living ◽  
Natural Induction ◽  
Formica Fusca ◽  
Time Of Year ◽  
Nectar Availability

AbstractFor quaking aspen (Populus tremuloides Michaux; Salicaceae) the rate of extrafloral (EF) sugar secretion is increased by defoliation and decreased by drought. Although wholesale blocking of EF nectar has been shown to reduce ant (Hymenoptera: Formicidae) visitation to aspen, the effect of more subtle and realistic variations in nectar availability on ant recruitment is unknown. Working in Alaskan boreal forest (United States of America), we reduced and supplemented EF nectar availability on potted aspen ramets of three genotypes and surveyed visitation by free-living Formica fusca (Linnaeus) (Hymenoptera: Formicidae). Ants were more responsive to a subtle increase in sugar availability than to a decrease. While nectar reduction had no effect on ant visitation, nectar supplementation increased ant visitation to one aspen genotype by 70% during an early summer trial. Average ant visitation to different aspen genotypes varied during the late summer, indicating that aspen genotype can influence attractiveness to ants. We conclude that natural induction of EF secretion in response to herbivory may benefit aspen through improved ant recruitment, though the response is dependent on aspen genotype and time of year. Differences among aspen genets in attractiveness to ants could influence the relative success of genotypes, especially in settings in which aspen regenerates from seed.

scholarly journals Assessing Genetic Diversity among Brettanomyces Yeasts by DNA Fingerprinting and Whole-Genome Sequencing

2014 ◽  
Vol 80 (14) ◽  
pp. 4398-4413 ◽  
Author(s):  
Sam Crauwels ◽  
Bo Zhu ◽  
Jan Steensels ◽  
Pieter Busschaert ◽  
Gorik De Samblanx ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Dna Fingerprinting ◽  
Wine Industry ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Content Type ◽  
Carbon And Nitrogen ◽  
Spoilage Yeasts ◽  
Off Flavors ◽  
Carbon And Nitrogen Metabolism

ABSTRACTBrettanomycesyeasts, with the speciesBrettanomyces(Dekkera)bruxellensisbeing the most important one, are generally reported to be spoilage yeasts in the beer and wine industry due to the production of phenolic off flavors. However,B. bruxellensisis also known to be a beneficial contributor in certain fermentation processes, such as the production of certain specialty beers. Nevertheless, despite its economic importance,Brettanomycesyeasts remain poorly understood at the genetic and genomic levels. In this study, the genetic relationship between more than 50Brettanomycesstrains from all presently known species and from several sources was studied using a combination of DNA fingerprinting techniques. This revealed an intriguing correlation between theB. bruxellensisfingerprints and the respective isolation source. To further explore this relationship, we sequenced a (beneficial) beer isolate ofB. bruxellensis(VIB X9085; ST05.12/22) and compared its genome sequence with the genome sequences of two wine spoilage strains (AWRI 1499 and CBS 2499). ST05.12/22 was found to be substantially different from both wine strains, especially at the level of single nucleotide polymorphisms (SNPs). In addition, there were major differences in the genome structures between the strains investigated, including the presence of large duplications and deletions. Gene content analysis revealed the presence of 20 genes which were present in both wine strains but absent in the beer strain, including many genes involved in carbon and nitrogen metabolism, and vice versa, no genes that were missing in both AWRI 1499 and CBS 2499 were found in ST05.12/22. Together, this study provides tools to discriminateBrettanomycesstrains and provides a first glimpse at the genetic diversity and genome plasticity ofB. bruxellensis.

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