SUMO-conjugating enzyme (Sce) and FK506-binding protein (FKBP) encoding rice (Oryza sativa L.) genes: genome-wide analysis, expression studies and evidence for their involvement in abiotic stress response

2008 ◽  
Vol 279 (4) ◽  
pp. 371-383 ◽  
Author(s):  
Neha Nigam ◽  
Amanjot Singh ◽  
Chandan Sahi ◽  
Anupama Chandramouli ◽  
Anil Grover
Keyword(s):  
Oryza Sativa ◽  
Abiotic Stress ◽  
Stress Response ◽  
Oryza Sativa L ◽  
Binding Protein ◽  
Abiotic Stress Response ◽  
Genome Wide Analysis ◽  
Fk506 Binding Protein ◽  
Expression Studies ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of the GRF Family Reveals Their Involvement in Abiotic Stress Response in Cassava

Genes ◽  
2018 ◽  
Vol 9 (2) ◽  
pp. 110 ◽  
Author(s):  
Sang Shang ◽  
Chunlai Wu ◽  
Chao Huang ◽  
Weiwei Tie ◽  
Yan Yan ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Response ◽  
Abiotic Stress Response ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of Poplar SQUAMOSA-Promoter-Binding Protein (SBP) Family under Salt Stress

Forests ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 413
Author(s):  
Qing Guo ◽  
Li Li ◽  
Kai Zhao ◽  
Wenjing Yao ◽  
Zihan Cheng ◽  
...  
Keyword(s):  
Salt Stress ◽  
Abiotic Stress ◽  
Stress Responses ◽  
Growth And Development ◽  
Binding Protein ◽  
Gene Segment ◽  
Gene Expression Pattern ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Squamosa Promoter Binding Protein

SQUAMOSA promoter binding protein (SBP) is a kind of plant-specific transcription factor, which plays a crucial role in stress responses and plant growth and development by activating and inhibiting the transcription of multiple target genes. In this study, a total of 30 SBP genes were identified from Populus trichocarpa genome and randomly distributed on 16 chromosomes in poplar. According to phylogenetic analysis, the PtSBPs can be divided into six categories, and 14 out of the genes belong to VI. Furthermore, the SBP genes in VI were proved to have a targeting relationship with miR156. The homeopathic element analysis showed that the promoters of poplar SBP genes mainly contain the elements involved in growth and development, abiotic stress and hormone response. In addition, there existed 10 gene segment duplication events in the SBP gene duplication analysis. Furthermore, there were four poplar and Arabidopsis orthologous gene pairs among the poplar SBP members. What is more, poplar SBP gene family has diverse gene expression pattern under salt stress. As many as nine SBP members were responding to high salt stress and six members possibly participated in growth development and abiotic stress. Yeast two-hybrid experiments indicated that PtSBPs can form heterodimers to interact in the transcriptional regulatory networks. The genome-wide analysis of poplar SBP family will contribute to function characterization of SBP genes in woody plants.

Genome-wide identification, phylogeny and expression analysis of HSF gene family in barley during abiotic stress response and reproductive development

Plant Gene ◽  
2020 ◽  
Vol 23 ◽  
pp. 100231
Author(s):  
Sumit Kumar Mishra ◽  
Anuj Kumar Poonia ◽  
Reeku Chaudhary ◽  
Vinay K. Baranwal ◽  
Deepanksha Arora ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Response ◽  
Gene Family ◽  
Expression Analysis ◽  
Reproductive Development ◽  
Abiotic Stress Response ◽  
Genome Wide

scholarly journals Genome-Wide Identification and Expression Analyses of the Chitinases under Cold and Osmotic stress in Ammopiptanthus nanus

Genes ◽  
2019 ◽  
Vol 10 (6) ◽  
pp. 472 ◽  
Author(s):  
Cao ◽  
Wang ◽  
Li ◽  
Shi ◽  
Gao ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Response ◽  
Low Temperature ◽  
Osmotic Stress ◽  
Fungal Pathogens ◽  
Glycosyl Hydrolase ◽  
Class Iii ◽  
Abiotic Stress Response ◽  
Ammopiptanthus Nanus ◽  
Genome Wide

Chitinase is a kind of hydrolase with chitin as a substrate and is proposed to play an essential role in plant defense system by functioning against fungal pathogens through degrading chitin. Recent studies indicated chitinase is also involved in abiotic stress response in plants, helping plants to survive in stressful environments. A. nanus, a rare evergreen broad-leaved shrub distrusted in deserts in Central Asia, exhibits a high level of tolerance to drought and low temperature stresses. To identify the chitinase gene involved in drought and low temperature responses in A. nanus, we performed genome-wide identification, classification, sequence alignment, and spatio-temporal gene expression analysis of the chitinases in A. nanus under osmotic and low temperature stress. A total of 32 chitinase genes belonging to glycosyl hydrolase 18 (GH18) and GH19 families were identified from A. nanus. Class III chitinases appear to be amplified quantitatively in A. nanus, and their genes carry less introns, indicating their involvement in stress response in A. nanus. The expression level of the majority of chitinases varied in leaves, stems, and roots, and regulated under environmental stress. Some chitinases, such as EVM0022783, EVM0020238, and EVM0003645, are strongly induced by low temperature and osmotic stress, and the MYC/ICE1 (inducer of CBF expression 1) binding sites in promoter regions may mediate the induction of these chitinases under stress. These chitinases might play key roles in the tolerance to these abiotic stress in A. nanus and have potential for biotechnological applications. This study provided important data for understanding the biological functions of chitinases in A. nanus.

scholarly journals Arabidopsis thaliana calcium-dependent lipid-binding protein (AtCLB): a novel repressor of abiotic stress response

2011 ◽  
Vol 62 (8) ◽  
pp. 2679-2689 ◽  
Author(s):  
Kanishka de Silva ◽  
Bozena Laska ◽  
Christopher Brown ◽  
Heike Winter Sederoff ◽  
Mariya Khodakovskaya
Keyword(s):  
Arabidopsis Thaliana ◽  
Abiotic Stress ◽  
Stress Response ◽  
Binding Protein ◽  
Lipid Binding ◽  
Abiotic Stress Response ◽  
Lipid Binding Protein ◽  
Calcium Dependent

Genome-wide analysis of cyclin family in rice (Oryza Sativa L.)

2006 ◽  
Vol 275 (4) ◽  
pp. 374-386 ◽  
Author(s):  
Honggui La ◽  
Jun Li ◽  
Zhendong Ji ◽  
Yanjun Cheng ◽  
Xiuli Li ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.)

Plant Science ◽  
2007 ◽  
Vol 172 (4) ◽  
pp. 708-721 ◽  
Author(s):  
R. Naga Amrutha ◽  
P. Nataraj Sekhar ◽  
Rajeev K. Varshney ◽  
P.B. Kavi Kishor
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Potassium Transporter ◽  
Genome Wide
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