Allelic variation in sugary1 gene affecting kernel sweetness among diverse-mutant and -wild-type maize inbreds

2021 ◽  
Author(s):  
Rashmi Chhabra ◽  
Vignesh Muthusamy ◽  
Nisrita Gain ◽  
Ashvinkumar Katral ◽  
Nitish R. Prakash ◽  
...  
Keyword(s):  
Allelic Variation ◽  
Wild Type ◽  
Maize Inbreds

scholarly journals The Variability of Puroindoline-Encoding Alleles and Their Influence on Grain Hardness in Modern Wheat Cultivars Cultivated in Poland, Breeding Lines and Polish Old Landraces (Triticum aestivum L.)

Agronomy ◽  
2020 ◽  
Vol 10 (8) ◽  
pp. 1075
Author(s):  
Mateusz Przyborowski ◽  
Sebastian Gasparis ◽  
Maciej Kała ◽  
Wacław Orczyk ◽  
Anna Nadolska-Orczyk
Keyword(s):  
Triticum Aestivum ◽  
System Analysis ◽  
Allelic Variation ◽  
Triticum Aestivum L ◽  
Nucleotide Polymorphisms ◽  
Wheat Cultivars ◽  
Grain Hardness ◽  
Wild Type ◽  
Breeding Lines ◽  
Modern Wheat

Wheat (Triticum aestivum L.) grain hardness is determined mainly by variations in puroindoline genes (Pina-D1 and Pinb-D1), which are located on the short arm of chromosome 5D. This trait has a direct effect on the technological properties of the flour and the final product quality. The objective of the study was to analyze the mutation frequency in both Pin genes and their influence on grain hardness in 118 modern bread wheat cultivars and breeding lines cultivated in Poland, and 80 landraces from Poland. The PCR products containing the Pin gene coding sequences were sequenced by the Sanger method. Based on detected the SNPs (single-nucleotide polymorphisms) we designed CAPS (cleaved amplified polymorphic sequence) markers for the fast screening of Pinb alleles in a large number of genotypes. All analyzed cultivars, breeding lines, and landraces possess the wild-type Pina-D1a allele. Allelic variation was observed within the Pinb gene. The most frequently occurring allele in modern wheat cultivars and breeding lines (over 50%) was Pinb-D1b. The contribution of the remaining alleles (Pinb-D1a, Pinb-D1c, and Pinb-D1d) was much less (approx. 15% each). In landraces, the most frequent allele was Pinb-D1a (over 70%), followed by Pinb-D1b (21% frequency). Pinb-D1c and Pinb-D1g were found in individual varieties. SKCS (single-kernel characterization system) analysis revealed that grain hardness was strictly connected with Pinb gene allelic variation in most tested cultivars. The mean grain hardness values were significantly greater in cultivars with mutant Pinb variants as compared to those with the wild-type Pinb-D1a allele. Based on grain hardness measured by SKCS, we classified the analyzed cultivars and lines into different classes according to a previously proposed classification system.

scholarly journals Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation is associated with partial recessive red phenotypes in dog

2020 ◽  
Author(s):  
Heidi Anderson ◽  
Leena Honkanen ◽  
Päivi Ruotanen ◽  
Julia Mathlin ◽  
Jonas Donner
Keyword(s):  
Citizen Science ◽  
Coat Color ◽  
Allelic Variation ◽  
Wild Type ◽  
Melanocortin 1 Receptor ◽  
Phenotype Analysis ◽  
Genotype Screening ◽  
Dominant Black ◽  
Novel Allele

Abstract Background The Melanocortin 1 Receptor (MC1R) plays a central role in regulation of coat color determination in dogs and is commonly referred to as the “E (extension) Locus”. Allelic variation of the MC1R gene is associated with coat color phenotypes EM (melanistic mask), EG (grizzle/domino) and e1–3 (recessive red) in dogs. In addition, a previous study of archeological dog specimens over 10,000 years of age identified a variant p.R301C in the MC1R gene that may have influenced coat color of early dogs. Results Commercial genotyping of 11,726 dog samples showed the R301C variant of the MC1R gene was present in 34 breeds or breed varieties, at an allele frequency of 1.48% in the tested population. We detected no linkage disequilibrium between R301C and other tested alleles of the E locus. Based on current convention we propose that R301C should be considered a novel allele of the E locus, which we have termed eA for “e ancient”. Phenotype analysis of owner-provided dog pictures reveals eA allele has an impact on coat color and is recessive to wild type E and dominant to the e alleles. In dominant black (KB/*) dogs it can prevent the expression of the K locus, and the expressed coat color is solely determined by the A locus. In the absence of dominant black, eA/eA and eA/e genotypes result in the coat color patterns referred to in their respective breed communities as domino in Alaskan Malamute and other Spitz breeds, grizzle in Chihuahua, and pied in Beagle. Conclusions This study demonstrates a large genotype screening effort to identify the frequency and distribution of the MC1R R301C variant, one of the earliest mutations captured by canine domestication, and citizen science empowered characterization of its impact on coat color.

scholarly journals Susceptibility of Maize to Stalk Rot Caused by Fusarium graminearum Deoxynivalenol and Zearalenone Mutants

2016 ◽  
Vol 106 (8) ◽  
pp. 920-927 ◽  
Author(s):  
L. M. Quesada-Ocampo ◽  
J. Al-Haddad ◽  
A. C. Scruggs ◽  
C. R. Buell ◽  
F. Trail
Keyword(s):  
Fusarium Graminearum ◽  
Natural Variation ◽  
Grain Filling ◽  
Wild Type ◽  
Lesion Area ◽  
Stalk Rot ◽  
Maize Inbreds ◽  
Using Data ◽  
Genetic Clustering ◽  
Simple Sequence

Fusarium graminearum is a destructive pathogen of cereals that can cause stalk rot in maize. Stalk rot results in yield losses due to impaired grain filling, premature senescence, and lodging, which limits production and harvesting of ears. In addition, mycotoxins can make infected tissues unfit for silage. Our objectives were to evaluate the natural variation in stalk rot resistance among maize inbreds, to establish whether deoxynivalenol (DON)- and zearalenone (ZEA)-deficient strains are pathogenic on a panel of diverse inbreds, and to quantify the accumulation of DON in infected stalk tissue. Wild-type F. graminearum and mycotoxin mutants (DON and ZEA) were used to separately inoculate stalks of 9-week-old plants of 20 inbreds in the greenhouse. Plants were evaluated for lesion area at the inoculation point at 0, 2, 14, and 28 days postinoculation and tissues around lesions were sampled to determine the DON content. Regardless of their ability to produce DON or ZEA, all tested F. graminearum strains caused stalk rot; however, significant differences in disease levels were detected. Among the tested inbreds, Mp717 was resistant to all three F. graminearum strains while Mp317 and HP301 were only partially resistant. Accumulation of DON was significantly lower in infected stalks of the resistant and partially resistant inbreds than the susceptible inbreds. Analysis of the 20 inbreds using data from 17 simple-sequence repeats revealed population structure among the individuals; however, there was no association between genetic clustering and stalk rot resistance. These findings are an additional step toward breeding maize inbreds suitable for planting in fields infested with F. graminearum.

scholarly journals Taste sensitivity to a mixture of monosodium glutamate and inosine 5′-monophosphate by mice lacking both subunits of the T1R1+T1R3 amino acid receptor

2018 ◽  
Vol 314 (6) ◽  
pp. R802-R810 ◽  
Author(s):  
Ginger D. Blonde ◽  
Susan P. Travers ◽  
Alan C. Spector
Keyword(s):  
Compound Stimulus ◽  
Allelic Variation ◽  
Monosodium Glutamate ◽  
Taste Sensitivity ◽  
Receptor Subunit ◽  
Wild Type ◽  
Independent Mechanism ◽  
Limited Degree ◽  
Operant Task ◽  
High Concentrations

The taste of l-glutamate and its synergism with 5′-ribonucleotides is thought to be primarily mediated through the T1R1+T1R3 heterodimer in some mammals, including rodents and humans. While knockout (KO) mice lacking either receptor subunit show impaired sensitivity to a range of monosodium glutamate (MSG) concentrations mixed with 2.5 mM inosine 5′-monophosphate (IMP) in amiloride, wild-type (WT) controls can detect this IMP concentration, hindering direct comparison between genotypes. Moreover, some residual sensitivity persists in the KO group, suggesting that the remaining subunit could maintain a limited degree of function. Here, C57BL/6J, 129X1/SvJ, and T1R1+T1R3 double KO mice ( n = 16 each to start the experiment) were trained in a two-response operant task in gustometers and then tested for their ability to discriminate 100 µM amiloride from MSG (starting with 0.6 M) and IMP (starting with 2.5 mM) in amiloride (MSG+I+A). Testing continued with successive dilutions of both MSG and IMP (in amiloride). The two WT strains were similarly sensitive to MSG+I+A ( P > 0.8). KO mice, however, were significantly impaired relative to either WT strain ( P < 0.01), although they were able to detect the highest concentrations. Thus, normal detectability of MSG+I+A requires an intact T1R1+T1R3 receptor, without regard for allelic variation in the T1R3 gene between the WT strains. Nevertheless, residual sensitivity by the T1R1+T1R3 KO mice demonstrates that a T1R-independent mechanism can contribute to the detectability of high concentrations of this prototypical umami compound stimulus.

scholarly journals Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Heidi Anderson ◽  
Leena Honkanen ◽  
Päivi Ruotanen ◽  
Julia Mathlin ◽  
Jonas Donner
Keyword(s):  
Citizen Science ◽  
Coat Color ◽  
Allelic Variation ◽  
Phenotypic Expression ◽  
Wild Type ◽  
Melanocortin 1 Receptor ◽  
Phenotype Analysis ◽  
Genotype Screening ◽  
Dominant Black

Abstract Background The Melanocortin 1 Receptor (MC1R) plays a central role in regulation of coat color determination in various species and is commonly referred to as the “E (extension) Locus”. Allelic variation of the MC1R gene is associated with coat color phenotypes EM (melanistic mask), EG (grizzle/domino) and e1–3 (recessive red) in dogs. In addition, a previous study of archeological dog specimens over 10,000 years of age identified a variant p.R301C in the MC1R gene that may have influenced coat color of early dogs. Results Commercial genotyping of 11,750 dog samples showed the R301C variant of the MC1R gene was present in 35 breeds or breed varieties, at an allele frequency of 1.5% in the tested population. We detected no linkage disequilibrium between R301C and other tested alleles of the E locus. Based on current convention we propose that R301C should be considered a novel allele of the E locus, which we have termed eA for “e ancient red”. Phenotype analysis of owner-provided dog pictures reveals that the eA allele has an impact on coat color and is recessive to wild type E and dominant to the e alleles. In dominant black (KB/*) dogs it can prevent the phenotypic expression of the K locus, and the expressed coat color is solely determined by the A locus. In the absence of dominant black, eA/eA and eA/e genotypes result in the coat color patterns referred to in their respective breed communities as domino in Alaskan Malamute and other Spitz breeds, grizzle in Chihuahua, and pied in Beagle. Conclusions This study demonstrates a large genotype screening effort to identify the frequency and distribution of the MC1R R301C variant, one of the earliest mutations captured by canine domestication, and citizen science empowered characterization of its impact on coat color.

scholarly journals Photoregulation of the Cat2 and Cat3 catalase genes in pigmented and pigment-deficient maize: the circadian regulation of Cat3 is superimposed on its quasi-constitutive expression in maize leaves.

Genetics ◽  
1991 ◽  
Vol 127 (3) ◽  
pp. 601-607 ◽  
Author(s):  
A Acevedo ◽  
J D Williamson ◽  
J G Scandalios
Keyword(s):  
Allelic Variation ◽  
Constitutive Expression ◽  
Continuous Light ◽  
State Level ◽  
Sampling Period ◽  
Wild Type ◽  
Dark Cycle ◽  
Light Regimes ◽  
Maize Leaves ◽  
Rna Accumulation

Abstract We have investigated the accumulation of Cat2 and Cat3 catalase transcripts in 6-7-day postimbibition leaves of normally pigmented and pigment-deficient maize seedlings under different light regimes. In seedlings of normal inbred maize lines Cat2 mRNA accumulates to significantly higher levels in either continuous light or a diurnal light/dark cycle than in continuous dark. In contrast to the high levels of the Cat2 message observed in their wild-type siblings, carotenoid-deficient mutants accumulate Cat2 mRNA at barely detectable levels. Mutants deficient in chlorophylls, but having normal carotenoid levels, accumulate normal levels of Cat2 mRNA. This suggests that both light and carotenoids are required for the normal accumulation of the Cat2 message. The steady-state level of Cat3 RNA exhibits a dramatic diurnal variation when seedlings are grown under a 24-hr light/dark cycle. We have previously shown that this variation is at the level of Cat3 gene transcription and is under the control of a novel circadian rhythm. In this study we show that both pigment-deficient mutants and their wild-type siblings exhibit the normal diurnal pattern of Cat3 RNA accumulation. This indicates that photosynthetic pigments, allelic variation, and genetic background do not directly affect the temporal pattern of Cat3 accumulation in leaves. We observed, however, that when normal plants are grown in either continuous light or continuous dark, the Cat3 transcript in leaves is present at uniformly high levels throughout the 24-hr sampling period.(ABSTRACT TRUNCATED AT 250 WORDS)

scholarly journals Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation is associated with partial recessive red phenotypes in dog

2020 ◽  
Author(s):  
Heidi Anderson ◽  
Leena Honkanen ◽  
Päivi Ruotanen ◽  
Julia Mathlin ◽  
Jonas Donner
Keyword(s):  
Citizen Science ◽  
Coat Color ◽  
Allelic Variation ◽  
Wild Type ◽  
Melanocortin 1 Receptor ◽  
Phenotype Analysis ◽  
Genotype Screening ◽  
Dominant Black ◽  
Novel Allele

Abstract Background: The Melanocortin 1 Receptor (MC1R) plays a central role in regulation of coat color determination in dogs and is commonly referred to as the “E (extension) Locus”. Allelic variation of the MC1R gene is associated with coat color phenotypes EM (melanistic mask), EG (grizzle/domino) and e1-3 (recessive red) in dogs. In addition, a previous study of archeological dog specimens over 10,000 years of age identified a variant p.R301C in the MC1R gene that may have influenced coat color of early dogs.Results: Commercial genotyping of 11,750 dog samples showed the R301C variant of the MC1R gene was present in 35 breeds or breed varieties, at an allele frequency of 1.5% in the tested population. We detected no linkage disequilibrium between R301C and other tested alleles of the E locus. Based on current convention we propose that R301C should be considered a novel allele of the E locus, which we have termed eA for “e ancient red”. Phenotype analysis of owner-provided dog pictures reveals that the eA allele has an impact on coat color and is recessive to wild type E and dominant to the e alleles. In dominant black (KB/*) dogs it can prevent the expression of the K locus, and the expressed coat color is solely determined by the A locus. In the absence of dominant black, eA/eA and eA/e genotypes result in the coat color patterns referred to in their respective breed communities as domino in Alaskan Malamute and other Spitz breeds, grizzle in Chihuahua, and pied in Beagle.Conclusions: This study demonstrates a large genotype screening effort to identify the frequency and distribution of the MC1R R301C variant, one of the earliest mutations captured by canine domestication, and citizen science empowered characterization of its impact on coat color.

Southeast Asian waxy maize (Zea mays L.), a resource for amylopectin starch quality types?

2016 ◽  
Vol 15 (5) ◽  
pp. 430-437 ◽  
Author(s):  
Peter Stamp ◽  
Simona Eicke ◽  
Sansern Jampatong ◽  
Ham Le-Huy ◽  
Choosak Jompuk ◽  
...  
Keyword(s):  
Starch Granule ◽  
Allelic Variation ◽  
Wild Type ◽  
Starch Properties ◽  
Food And Feed ◽  
Granule Morphology ◽  
Selection For ◽  
Soft Grains ◽  
Selection Of ◽  
Amylose Free

AbstractAmylose-free (waxy) maize has been a vegetable (cooked ears) and staple food in Southeast Asia for centuries, resulting in hundreds of landraces (LRs) across the region. The recessive waxy allele induces soft grains with preferred cooking and flavour properties. We hypothesized that eating preferences resulted in the additional selection for different starch properties, reflected in altered starch granule morphology or amylopectin structure. A total of 41 LRs were available as starting material that had been used by different ethnic groups in Vietnam and Thailand. Unluckily, some LR were not pure waxy, but we successfully regained the original pure waxy status for most. Twenty LR were chosen for analysis of starch traits according to their purity. Four different waxy mutations were identified, including two unknown alleles. This is a strong proof for parallel independent selection of waxy maize in the region. Starch granule morphology and size were similar among all LRs. Gelatinization properties differed only between waxy and wild-type LR, and all waxy LR were comparable to a commercial waxy hybrid. The fine structure of waxy amylopectin had fewer short chains compared with that in wild-type. So far, the differences observed in starch properties are likely associated exclusively with the waxy trait. Despite the strong selection for amylose-free starch, there was no evidence for additional region wide selection for other special starch properties in our collection. In conclusion, all analyses did not encourage further targeted research on allelic variation of other starch metabolism genes for future use in the food and feed industry.

scholarly journals Comprehensive genetic testing combined with citizen science reveals a recently characterized ancient MC1R mutation associated with partial recessive red phenotypes in dog 

2020 ◽  
Author(s):  
Heidi Anderson ◽  
Leena Honkanen ◽  
Päivi Ruotanen ◽  
Julia Mathlin ◽  
Jonas Donner
Keyword(s):  
Citizen Science ◽  
Coat Color ◽  
Allelic Variation ◽  
Phenotypic Expression ◽  
Wild Type ◽  
Melanocortin 1 Receptor ◽  
Phenotype Analysis ◽  
Genotype Screening ◽  
Dominant Black

Abstract Background: The Melanocortin 1 Receptor (MC1R) plays a central role in regulation of coat color determination in various species and is commonly referred to as the “E (extension) Locus”. Allelic variation of the MC1R gene is associated with coat color phenotypes EM (melanistic mask), EG (grizzle/domino) and e1-3 (recessive red) in dogs. In addition, a previous study of archeological dog specimens over 10,000 years of age identified a variant p.R301C in the MC1R gene that may have influenced coat color of early dogs.Results: Commercial genotyping of 11,750 dog samples showed the R301C variant of the MC1R gene was present in 35 breeds or breed varieties, at an allele frequency of 1.5% in the tested population. We detected no linkage disequilibrium between R301C and other tested alleles of the E locus. Based on current convention we propose that R301C should be considered a novel allele of the E locus, which we have termed eA for “e ancient red”. Phenotype analysis of owner-provided dog pictures reveals that the eA allele has an impact on coat color and is recessive to wild type E and dominant to the e alleles. In dominant black (KB/*) dogs it can prevent the phenotypic expression of the K locus, and the expressed coat color is solely determined by the A locus. In the absence of dominant black, eA/eA and eA/e genotypes result in the coat color patterns referred to in their respective breed communities as domino in Alaskan Malamute and other Spitz breeds, grizzle in Chihuahua, and pied in Beagle.Conclusions: This study demonstrates a large genotype screening effort to identify the frequency and distribution of the MC1R R301C variant, one of the earliest mutations captured by canine domestication, and citizen science empowered characterization of its impact on coat color.

Ultrastructure of Melanin Formation in Curvularia sp., Alternaria sp., and Drechslera Sorokiniana

1977 ◽  
Vol 35 ◽  
pp. 398-399
Author(s):  
M. H. Wheeler ◽  
W. J. Tolmsoff ◽  
A. A. Bell
Keyword(s):  
Potassium Phosphate ◽  
Thielaviopsis Basicola ◽  
Wild Type ◽  
Potassium Phosphate Buffer ◽  
Transmission Microscopy ◽  
Electron Transmission ◽  
Melanin Formation ◽  
Before And After ◽  
Alternaria Sp ◽  
Electron Transmission Microscopy

(+)-Scytalone [3,4-dihydro-3,6,8-trihydroxy-l-(2Hj-naphthalenone] and 1,8-di- hydroxynaphthalene (DHN) have been proposed as intermediates of melanin synthesis in the fungi Verticillium dahliae (1, 2, 3, 4) and Thielaviopsis basicola (4, 5). Scytalone is enzymatically dehydrated by V. dahliae to 1,3,8-trihydroxynaphthalene which is then reduced to (-)-vermelone [(-)-3,4- dihydro-3,8-dihydroxy-1(2H)-naphthalenone]. Vermelone is subsequently dehydrated to DHN which is enzymatically polymerized to melanin.Melanin formation in Curvularia sp., Alternaria sp., and Drechslera soro- kiniana was examined by light and electron-transmission microscopy. Wild-type isolates of each fungus were compared with albino mutants before and after treatment with 1 mM scytalone or 0.1 mM DHN in 50 mM potassium phosphate buffer, pH 7.0. Both chemicals were converted to dark pigments in the walls of hyphae and conidia of the albino mutants. The darkened cells were similar in appearance to corresponding cells of the wild types under the light microscope.

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