Characterization and primer development for amplification of chloroplast microsatellite regions of Fraxinus excelsior

2005 ◽  
Vol 118 (5) ◽  
pp. 339-341 ◽  
Author(s):  
M. E. Harbourne ◽  
G. C. Douglas ◽  
S. Waldren ◽  
T. R. Hodkinson
2012 ◽  
Vol 61 (1-6) ◽  
pp. 18-27 ◽  
Author(s):  
D. Gömöry ◽  
L. Paule ◽  
D. Krajmerová ◽  
I. Romšáková ◽  
J. Piecka

Abstract Hybridization between divergent lineages of common ash Fraxinus excelsior L. was studied in Slovakia and adjacent regions of Hungary, the Czech Republic and Poland in the contact zone between two postglacial colonization routes originating from different glacial refugia. Thirty-eight common ash populations were studied using a combination of 6 maternally inherited chloroplast microsatellite markers and 7 biparentally inherited nuclear microsatellites (nSSR). Two predominant chloroplast lineages were identified, between which the boundary was very sharp. Populations containing a mixture of different haplotypes were found only in the immediate proximity of the boundary. Bayesian analysis of population structure based on nSSR loci revealed the existence of two clusters, which largely coincided with chloroplast lineages. Both haplotype frequencies and proportions of clusters identified by the Bayesian analysis exhibited a clinal transition over the hybrid zone, with cline widths of 36 km for chloroplast haplotype frequencies (reflecting gene flow by seeds) and 275 km for Bayesian clusters based on nSSR (reflecting gene flow by pollen and seeds). Chloroplast haplotype diversity increased along the boundary between lineages not only because of admixture, but also due to the presence of rare haplotypes. In contrast, diversity at nuclear loci did not exhibit any geographical trend.


2018 ◽  
Vol 9 (03) ◽  
pp. 20192-20203
Author(s):  
Dr Maghsoudi, Hossein ◽  
Samaneh Haj-allahyari

Osteoarthritis (arthritis) is biomechanical, biochemical and cellular phenomenon, and is not known as a degenerative disease. Arthritis is one of the common chronic diseases and the most important reason of physical disability in the world. According to its side effect such as peptic ulcers, gastrointestinal bleeding, liver toxicity and renal complications dueofprescribing current treatment contain corticosteroid and non-steroidal, we decided to evaluate possible effect of anti-inflammatory Esential oil of Fraxinus excelsior (EOFE) on biomarkers involved in disease. EOFE were prepared of genetic resources center. Bovine  articular cartilage derived from the metacarpophalangeal joints of 14–18-month-old animals (without any sign of inflammation and bleeding) sent to laboratory in sterile bags at 4ºC. Cells were cultured in appropriate condition and counted by hemocytometer, viability assessed by trypan blue. After LPS treatment, cytokine levels were assayed. Cells cultures again and were kept in 37C, 90% humidity in CO2 incubator and after RNA extraction, RT-PCR and PCR done. Also by Real-time PCR, gene expression was evaluated. E.E.F.E level cause down regulation of COX-2, IL-1β, TNF-α in LPS-stimulated cells.


2001 ◽  
Vol 66 ◽  
Author(s):  
M. Tabari ◽  
N. Lust ◽  
L. Nachtergale

Broadleaves  regeneration dynamics and the succession mechanism were studied within  a    transect of 14 m x 56 m in a dense 80-year-old ash stand situated on an  alluvial soil. For this    purpose, abundance and height of all naturally regenerated species at  different development    stages were analyzed and their distribution over the juvenile and older  growth stages    determined.    The study reveals that from the main broadleaved tree species, Quercus robur and Fagus    sylvatica regeneration scarcely occur at any  growth stages. No Fraxinus excelsior regeneration,    except 1 unit, taller than sapling (1.5-4 m) can be found on this soil  type. On the contrary, Acer    pseudoplatanus represents different development  stages (seedling, sapling, thicket, small pole    and large pole) and in stand patches where an understorey is practically  lacking, its    regeneration is well developed. Results generally show that at the juvenile  and older growth    stages Acer proceeds Fraxinus and regeneration is largely  dominated by the invasive Acer. It is    expected that this succession process will continue and that Acer will overcome in the    overstorey and even gradually form an almost single-species dominating  stage. Direct    interventions are unavoidable in order to regulate the primary mixture  patterns.


Genome ◽  
2006 ◽  
Vol 49 (7) ◽  
pp. 786-798 ◽  
Author(s):  
T Kyndt ◽  
B Van Droogenbroeck ◽  
A Haegeman ◽  
I Roldán-Ruiz ◽  
G Gheysen

To generate inexpensive and efficient DNA markers for addressing a number of population genetics problems and identification of wild hybrids in Vasconcellea, we have evaluated the use of simple sequence repeat (SSR) primers previously developed for other species. A set of 103 Vasconcellea accessions and some individuals of the related genera Carica and Jacaratia were analyzed with 10 primer pairs directing amplification of chloroplast microsatellites in Nicotiana tabacum and 9 nuclear SSR primer pairs recently identified in Vasconcellea × heilbornii. Heterologous amplification of chloroplast SSRs was successful for 8 of the 10 loci, of which 6 showed polymorphism. Seven of the 9 nuclear SSR primer pairs were useful in Vasconcellea and often also in Jacaratia and Carica, all revealing polymorphism. Exclusive haplotypes for each described taxon were identified based on chloroplast microsatellite data. Clustering based on separate nuclear and chloroplast data resulted in a clear grouping per taxon, but only low resolution was obtained above species level. The codominancy of nuclear SSRs and the general high polymorphism rate of SSR markers will make them more useful in future population genetics studies and diversity assessment in conservation programs.Key words: Carica, Jacaratia, Vasconcellea, simple sequence repeats, cross-species amplification, classification, interspecific hybrids.


1999 ◽  
Vol 50 (336) ◽  
pp. 1223-1229 ◽  
Author(s):  
M. P. Patonnier ◽  
J. P. Peltier ◽  
G. Marigo
Keyword(s):  

1999 ◽  
Vol 56 (8) ◽  
pp. 641-650 ◽  
Author(s):  
Michèle Trémolières ◽  
Annik Schnitzler ◽  
José-Miguel Sánchez-Pérez ◽  
Diane Schmitt

1994 ◽  
Vol 72 (2) ◽  
pp. 261-267 ◽  
Author(s):  
Conceição Eneida Silveira ◽  
Alain Cottignies

Propagation by stem cuttings and in vitro culture of apical bud explants were studied on Fraxinus excelsior L. Stem cuttings from 4- to 7-year-old trees growing under natural conditions sprouted only when cuttings were taken from dormant material. Only 6% of those that had sprouted developed roots by the 7th month of culture. Similarly, only apical bud explants harvested during the dormant period sprouted in vitro. Up to 87% of these sprouts developed two to four branching adventitious roots after 5 months of culture. During the initial phase of in vitro culture, the Quoirin and Lepoivre medium and the woody plant medium favoured sprout lengthening. During the phase of multiplication, up to three sprouts per explant developed with the woody plant medium in the presence of a combination of high 6-benzylaminopurine (3.0–4.0 mg∙L−1) and low indole-3-butyric acid (0.01–0.03 mg∙L−1) concentrations. Rooting was obtained in a medium without any growth regulators. Microscopic analysis showed a direct connection between the vascular elements of adventitious roots and stem of plantlet. Chromosome number in root apices of ash plantlets and ash trees grown under natural conditions was 2n = 46. Key words: chromosome number, Fraxinus excelsior L., in vitro plants, micropropagation, stem cuttings.


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