scholarly journals Disentangling the taxonomic status and phylogeographic structure of Marmora’s (Curruca sarda) and Balearic Warbler (Curruca balearica): a genetic multi-marker approach

2021 ◽  
Author(s):  
Davide Nespoli ◽  
Irene Pellegrino ◽  
Marco Galaverni ◽  
Romolo Caniglia ◽  
Joseph Sunyer ◽  
...  
Keyword(s):  
Sibling Species ◽  
Species Complex ◽  
Genetic Variance ◽  
Nuclear Gene ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Integrative Taxonomy ◽  
Genetic Distances ◽  
Phylogeographic Structure ◽  
Different Populations

AbstractMarmora’s Warbler (Curruca sarda) and Balearic Warbler (C. balearica) are allopatric sibling species and were recently split mostly based on morphological and ethological characteristics. Here we provide the first phylogenetic and phylogeographic analyses of this species complex to support the taxonomic status of C. sarda and C. balearica in light of integrative taxonomy. We sampled the two taxa in most of their breeding ranges and we sequenced three mitochondrial and one nuclear gene region. All C. balearica individuals had private haplotypes for the four markers and formed monophyletic clades. Genetic distances between the two taxa were comparable with those found between other species belonging to the Curruca genus. Furthermore, most of the genetic variance was expressed at the interspecific level, rather than between different populations within taxa or between individuals within populations. Our results strongly support the current taxonomic status of these two warblers as distinct species.

scholarly journals A revision of the Pyura stolonifera species complex (Tunicata, Ascidiacea), with a description of a new species from Australia

Zootaxa ◽  
2011 ◽  
Vol 2754 (1) ◽  
pp. 27 ◽  
Author(s):  
MARC RIUS ◽  
PETER R. TESKE
Keyword(s):  
New Species ◽  
Species Complex ◽  
Taxonomic Status ◽  
Single Species ◽  
Distinct Species ◽  
The Other ◽  
Solitary Ascidian ◽  
Different Populations ◽  
A New Species ◽  
Dorsal Tubercle

Pyura stolonifera is a large solitary ascidian found in Africa, Australasia and South America. The taxonomic status of different populations of this species is disputed, especially since there is evidence for several distinct morphological and genetic units that point towards the existence of multiple cryptic species. While some researchers still recognize P. stolonifera as a single species, others treat the different populations as distinct species. Here, we present a revision of the P. stolonifera species complex based on the examination of samples from all regions where there are reliable reports of this taxon. We recognize four species that are both morphologically and genetically distinct, one of which is new to science and is formally described here. This species is morphologically distinct from the other three members of the species complex in terms of the colour and texture of the tunic, the arrangement of the gonads within the gut and the shape of the dorsal tubercle, among other characters. We name the new species Pyura dalbyi after Dr. J.E. Dalby Jr., whose research on its ecology and distribution provided the incentive for examining this species more closely.

Taxonomic status of the Neotropical salamanders Bolitoglossa altamazonica and Bolitoglossa peruviana (Amphibia: Caudata: Plethodontidae), with the description of a new species from Northern Peru

Zootaxa ◽  
2020 ◽  
Vol 4834 (3) ◽  
pp. 365-406
Author(s):  
JUAN C. CUSI ◽  
GIUSSEPE GAGLIARDI-URRUTIA ◽  
ISABELA CARVALHO BRCKO ◽  
DAVID B. WAKE ◽  
RUDOLF VON MAY
Keyword(s):  
New Species ◽  
Species Complex ◽  
Phylogenetic Analyses ◽  
Nuclear Gene ◽  
Taxonomic Status ◽  
Genetic Distances ◽  
Conservation Area ◽  
Northern Peru ◽  
Rag 1 ◽  
Hands And Feet

We examine the phylogenetic relationships among salamanders of the genus Bolitoglossa (Eladinea) distributed in the Amazonian basin of northern Peru and southern Ecuador and assess species diversity based on morphological and phylogenetic analyses. We infer a molecular phylogeny using sequences from two mitochondrial (Cytb, 16S) and two nuclear genes (RAG–1, POMC). We find two well-supported subclades, one including [B. altamazonica + B. peruviana] + B. awajun sp. n., and the other including Bolitoglossa sp. Ituxi + Bolitoglossa sp. Jurúa. Ecuadorian lineages form divergent clades from the Peruvian lineages. Accordingly, Ecuadorian populations previously assigned to Bolitoglossa peruviana sensu lato are treated as members of a Bolitoglossa equatoriana species complex. A newly defined Bolitoglossa altamazonica species complex contains only populations from the Amazonian rainforest of Peru. Maximum likelihood and Bayesian Inference analyses confirm the phylogenetic placement of B. altamazonica and B. peruviana, and support recognition of a related new species of Bolitoglossa. The uncorrected genetic distances between the new species and B. altamazonica are 6.5% for Cytb and 4.9% for 16S; and the uncorrected genetic distances between the new species and B. peruviana are 8.0% for Cytb and 3.9% for 16S. Additionally, analyses of nuclear gene sequences show no haplotype sharing between the new species and closely related species. The new species is distinguished from its congeners by a combination of the following morphological characters: (1) Standard length mean 37.7 mm in males (range 32.0–42.2; n=5) and 41.4 mm in females (range 34.9–48.2; n=6); (2) in life, dorsal coloration uniformly brown with a dark brown triangular marking between the eyes or some irregular light cream spots or patches on the head, back and flanks; (3) iris pale golden; (4) in preservative, dark brown venter with cream mottlings or moderate-sized blotches on the gular region, belly, cloacal region and tail; (5) tips of third finger and third toe protuberant and pointed with nearly complete webbing on the hands and feet; (6) 11–26 maxillary teeth and 8–24 vomerine teeth. Given that the syntypes of B. altamazonica are lost, we designate a neotype for B. altamazonica from Allpahuayo Mishana National Reserve, Loreto department, Peru. Newly collected specimens from ~30 km NE from Moyobamba (type locality of B. peruviana) provide a better understanding of B. peruviana and enable us to show that it is the sister taxon of B. altamazonica. The new species is known from pre-montane forests in Cordillera Escalera Regional Conservation Area, Cordillera Azul National Park and Shucshuyacu, San Martin department, Peru at 485–1311 m elevation,  ~75 km SE from Moyobamba. Bolitoglossa awajun sp. n. is the fourth endemic species of salamander from Peru. 

scholarly journals Mitochondrial DNA suggests the existence of two distinct species in Moluccas and New Guinea within Nyctimystes infrafrenatus (Günther, 1867)

2021 ◽  
Vol 22 (8) ◽  
Author(s):  
Taufan Nurzaman Sulaeman ◽  
AMIR HAMIDY ◽  
ACHMAD FARAJALLAH ◽  
ANTOINE FOUQUET ◽  
AWAL RIYANTO ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
16S Rrna ◽  
Taxonomic Status ◽  
New Guinea ◽  
Distinct Species ◽  
Genetic Distances ◽  
Nominal Species ◽  
Northern Australia ◽  
Indonesian Archipelago ◽  
Biogeographic Regions

Abstract. Sulaeman TN, Hamidy A, Farajallah A, Fouquet A, Riyanto A, Arida E, Mulyadi, Trilaksono W, Munir M. 2021. Mitochondrial DNA suggests the existence of two distinct species in Moluccas and New Guinea within Nyctimystes infrafrenatus (Günther, 1867). Biodiversitas 22: 3287-3297. Nyctimystes infrafrenatus is a widespread frog species distributed across northern Australia, New Guinea, Bismarck archipelago and in the eastern part of Indonesian archipelago. The species thus encompasses two biogeographic regions, Papua and Wallacea. We evaluated the phylogenetic relationships among the populations from Papua and Moluccas based on two mitochondrial loci (16S rRNA and Cytochrome Oxidase Subunit I). Two major subclades are recovered within Nyctimystes infrafrenatus with subclade A being represented by populations from New Guinea and northern Australia and subclade B by Moluccan populations (Halmahera and Tidore). Genetic distances (2.3-4.2% in 16S rRNA) between these subclades suggest they could belong to distinct species. Since New Guinea populations correspond to the nominal species and that Nyctimystes tennuigranulatus (Boettger 1895), currently considered as a junior synonym of Nyctimystes infrafrenatus, is available for the northern Moluccan populations, we proposed to remove this taxon from synonymy. However, samples used in this study come from northern Moluccas, further studies including samples from Ambon (where another synonym was described i.e. Calamita dolichopsis) is needed to determine the taxonomic status of the southern Moluccan population whether they are conspecific with northern Moluccan population or not.

scholarly journals Taxonomy and Natural History of the Crematogaster (Decacrema)-group (Hymenoptera: Formicidae) in Madagascar

Zootaxa ◽  
2019 ◽  
Vol 2714 (1) ◽  
pp. 1 ◽  
Author(s):  
BONNIE B. BLAIMER
Keyword(s):  
Natural History ◽  
Species Identification ◽  
Species Complex ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Species Level ◽  
Species Status ◽  
Distribution Maps ◽  
History Information ◽  
History Of

The taxonomy of the Malagasy Crematogaster (Decacrema) is revised and a total of six distinct species and one species-complex are recognized. Malagasy Decacrema are widespread ants in Madagascar that nest almost exclusively arboreally, either in carton nests or inside dead twigs or branches, and often tend Coccoidea. Four species are newly described here: Crematogaster mahery sp. nov., C. malala sp. nov., C. sabatra sp. nov. and C. sisa sp. nov.. The species status of Crematogaster grevei Forel 1891 is confirmed by the study, and one described subspecies, C. hova nosibeensis Forel 1891 is raised to species level (C. nosibeensis stat. nov.) and a neotype designated. Crematogaster hova latinoda Forel 1891 is synonymised under C. hova Forel 1887, and the taxonomic status of C. hova, C. ensifera Forel 1910 and C. schencki Forel 1891 is further investigated, but could not be resolved with methods employed here. The C. hova-complex, a species-complex consisting of five morphological forms, is hence defined and the three described species above are associated with these morphotypes. Full descriptions including natural history information are presented for all species and the species-complex, as well as images, distribution maps and a species-identification key to the workers of Malagasy Decacrema. A diagnosis of the Malagasy Decacrema and identification keys to the subgenera of the ant genus Crematogaster in the Malagasy region are also provided.

scholarly journals Integrative taxonomy confirms the species status of the Himalayan langurs, Semnopithecus schistaceus Hodgson 1840

2019 ◽  
Author(s):  
Kunal Arekar ◽  
S. Sathyakumar ◽  
K. Praveen Karanth
Keyword(s):  
Taxonomic Status ◽  
Single Species ◽  
Distinct Species ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Multiple Sources ◽  
Species Status ◽  
Species Identity ◽  
Hanuman Langur ◽  
As Species

AbstractTaxonomy is replete with groups where the species identity and classification remain unresolved. One such group is the widely distributed Hanuman langur (Colobinae: Semnopithecus). For most part of the last century, Hanuman langur was considered to be a single species with multiple subspecies. Nevertheless, recent studies using an integrative taxonomy approach suggested that this taxon is a complex, with at least three species. However, these studies did not include the Himalayan population of the Hanuman langur whose taxonomic status remains unresolved. The Himalayan population of Hanuman langurs have been classified as a distinct species with multiple subspecies or have been subsumed into other species. These classification schemes are wholly based on morphological characters and which are sometimes insufficient to delimit different species. Here, we have integrated data from multiple sources viz. morphology, DNA, and ecology to resolve the taxonomy of the Himalayan langur and to understand its distribution limit. Our results with three lines of evidence corresponding to three different species concepts show that Himalayan langur is a distinct species from S. entellus of the plains. Additionally, these results did not show any support for splitting of the Himalayan langur into multiple subspecies. Our study supports the classification proposed by Hill (1939) and we recommend Semnopithecus schistaceus, Hodgson 1840 as species name for the Himalayan langur and subsume all the known subspecies into it.

scholarly journals Reassessment of the taxonomic status of Pseudopaludicola parnaiba (Anura, Leptodactylidae, Leiuperinae), with the description of a new cryptic species from the Brazilian Cerrado

2020 ◽  
Author(s):  
Felipe Silva De Andrade ◽  
Isabelle Aquemi Haga ◽  
Mariana Lúcio Lyra ◽  
Thiago Ribeiro De Carvalho ◽  
Célio Fernando Baptista Haddad ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Advertisement Call ◽  
Central Brazil ◽  
The Status ◽  
Different Populations ◽  
First Time ◽  
A New Species ◽  
Specific Identity

The Neotropical frog genus Pseudopaludicola includes 25 species distributed throughout South America. Herein we review the taxonomic status of P. parnaiba relative to P. canga and the specific identity of the population treated in previous studies as Pseudopaludicola sp. 3 from Barreirinhas in the Brazilian state of Maranhão. The lack of differentiation in advertisement call, morphology, and mitochondrial markers from topotypes and different populations rejects the status of P. parnaiba and Pseudopaludicola sp. 3 from Barreirinhas as distinct species. For these reasons, we suggest to formally consider P. parnaiba as a junior synonym of P. canga. We also found that a population previously reported as P. facureae from central Brazil (Palmeiras de Goiás, Goiás) corresponds to a cryptic species that we describe here as a new species. Lastly, we provide for the first time the phylogenetic positions of P. giarettai, P. llanera and P. pusilla.

scholarly journals Integrative taxonomy of an arctic bumblebee species complex highlights a new cryptic species (Apidae: Bombus)

2019 ◽  
Vol 187 (3) ◽  
pp. 599-621 ◽  
Author(s):  
Baptiste Martinet ◽  
Thomas Lecocq ◽  
Nicolas Brasero ◽  
Maxence Gerard ◽  
Klára Urbanová ◽  
...  
Keyword(s):  
Cryptic Species ◽  
Species Complex ◽  
Taxonomic Status ◽  
West Siberia ◽  
Integrative Taxonomy ◽  
The Arctic ◽  
Arctic Circle ◽  
Bumblebee Species ◽  
Species Groups ◽  
Taxonomic Approach

AbstractBumblebees have been the focus of much research, but the taxonomy of many species groups is still unclear, especially for circumpolar species. Delimiting species based on multisource datasets provides a solution to overcome current systematic issues of closely related populations. Here, we use an integrative taxonomic approach based on new genetic and eco-chemical datasets to resolve the taxonomic status of Bombus lapponicus and Bombus sylvicola. Our results support the conspecific status of B. lapponicus and B. sylvicola and that the low gradual divergence around the Arctic Circle between Fennoscandia and Alaska does not imply speciation in this species complex. Therefore, based on our molecular and morphological analyses, we propose to assign them subspecific status: Bombus lapponicus lapponicus from Fennoscandia and West Siberia and Bombus lapponicus sylvicola comb. nov. from Alaska and Yukon. In addition, our analyses reveal a cryptic species in the B. lapponicus complex from Alaska, which we describe here as new: Bombus (Pyrobombus) interacti sp. nov.

Metacercarial polymorphism and genetic variation of Paragonimus heterotremus (Digenea: Paragonimidae), and a re-appraisal of the taxonomic status of Paragonimus pseudoheterotremus

2013 ◽  
Vol 89 (2) ◽  
pp. 182-188 ◽  
Author(s):  
P.N. Doanh ◽  
U. Thaenkham ◽  
P.T. An ◽  
H.V. Hien ◽  
Y. Horii ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Taxonomic Status ◽  
Haplotype Network ◽  
Genetic Distances ◽  
Maximum Diameter ◽  
Molecular Characteristics ◽  
Extensive Collection ◽  
Different Populations ◽  
A New Species ◽  
India And China

AbstractParagonimus heterotremus, which is an important pathogen for human paragonimiasis in Asia, is recognized as having the smallest metacercariae (maximum diameter < 300 μm) of any previously reported Paragonimus species. Recently, P. pseudoheterotremus has been described from Thailand as a new species having metacercariae (about 200 μm) slightly smaller than those of Thai P. heterotremus. In fact, the small size of P. pseudoheterotremus metacercariae is compatible with those of P. heterotremus from India and China. In this study in Vietnam, we found variably sized small metacercariae which are expected to consist of both P. heterotremus and P. pseudoheterotremus. Contrary to expectation, the adult flukes obtained by separate infection of experimental cats with different sized metacercariae were all identified as P. heterotremus, using both morphological and molecular characteristics. The molecular analyses of an extensive collection of P. heterotremus/P. pseudoheterotremus isolates from Asian countries also indicated that genetic distances between different populations of P. heterotremus are even larger than that between P. pseudoheterotremus and P. heterotremus. The haplotype network showed that all P. heterotremus and P. pseudoheterotremus isolates formed a P. heterotremus complex consisting of three groups with strong geographical origins. In addition, the Indian P. heterotremus group is the root of the other P. heterotremus and P. pseudoheterotremus populations. Based on the observed metacercarial polymorphisms and genetic variation in P. heterotremus,P. pseudoheterotremus should be considered a geographically isolated population of the P. heterotremus complex.

scholarly journals The Caribbean slipper spurge Euphorbia tithymaloides : the first example of a ring species in plants

2012 ◽  
Vol 279 (1742) ◽  
pp. 3377-3383 ◽  
Author(s):  
N. Ivalú Cacho ◽  
David A. Baum
Keyword(s):  
Species Complex ◽  
Phylogenetic Analyses ◽  
Nuclear Gene ◽  
Distinct Species ◽  
Virgin Islands ◽  
Greater Antilles ◽  
Species Integrity ◽  
The Caribbean ◽  
Northern South America ◽  
Ring Species

A ring species arises when a parental population expands around an area of unsuitable habitat in such a way that when the two fronts meet they behave as distinct species while still being connected through a series of intergrading populations. Ring species offer great possibilities for studying the forces causing species divergence (e.g. the nature of pre-zygotic or post-zygotic reproductive isolation) or helping to maintain species integrity (e.g. reinforcement). Yet, ring species are extremely rare, and have only been documented convincingly in animals. Here, we present phylogenetic analyses of two nuclear gene regions from the Caribbean slipper spurge ( Euphorbia tithymaloides ) species complex that provide evidence that this group forms a ring species. These data show that the species complex originated in the area where Mexico and Guatemala meet, and expanded around the Caribbean basin along two distinct fronts: one eastward through the Yucatan Peninsula and into the Greater Antilles (GA); one southeastward through northern South America and then northward to the Lesser Antilles and eastern GA. The two terminal forms co-occur in the Virgin Islands and appear to be morphologically and ecologically distinct. Thus, our results suggest that Euphorbia tithymaloides is the first compelling example of a ring species in plants.

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