scholarly journals COVID-19 detection and disease progression visualization: Deep learning on chest X-rays for classification and coarse localization

2020 ◽  
Author(s):  
Tahmina Zebin ◽  
Shahadate Rezvy
Keyword(s):  
Disease Progression ◽  
Input Image ◽  
Mapping Technique ◽  
Detection Accuracy ◽  
X Rays ◽  
Automated Classification ◽  
X Ray ◽  
Chest X Ray ◽  
Activation Mapping

Abstract Chest X-rays are playing an important role in the testing and diagnosis of COVID-19 disease in the recent pandemic. However, due to the limited amount of labelled medical images, automated classification of these images for positive and negative cases remains the biggest challenge in their reliable use in diagnosis and disease progression. We implemented a transfer learning pipeline for classifying COVID-19 chest X-ray images from two publicly available chest X-ray datasets1,2. The classifier effectively distinguishes inflammation in lungs due to COVID-19 and Pneumonia from the ones with no infection (normal). We have used multiple pre-trained convolutional backbones as the feature extractor and achieved an overall detection accuracy of 90%, 94.3%, and 96.8% for the VGG16, ResNet50, and EfficientNetB0 backbones respectively. Additionally, we trained a generative adversarial framework (a CycleGAN) to generate and augment the minority COVID-19 class in our approach. For visual explanations and interpretation purposes, we implemented a gradient class activation mapping technique to highlight the regions of the input image that are important for predictions. Additionally, these visualizations can be used to monitor the affected lung regions during disease progression and severity stages.

scholarly journals COVID-19 detection and disease progression visualization: Deep learning on chest X-rays for classification and coarse localization

2020 ◽  
Author(s):  
Tahmina Zebin ◽  
Shahadate Rezvy ◽  
Wei Pang
Keyword(s):  
Disease Progression ◽  
Detection Accuracy ◽  
X Rays ◽  
Automated Classification ◽  
X Ray ◽  
Feature Extractor ◽  
Chest X Ray ◽  
Activation Mapping ◽  
Activation Map

Abstract Chest X-rays are playing an important role in the testing and diagnosis of COVID-19 disease in the recent pandemic. However, due to the limited amount of labelled medical images, automated classification of these images for positive and negative cases remains the biggest challenge in their reliable use in diagnosis and disease progression. We applied and implemented a transfer learning pipeline for classifying COVID-19 chest X-ray images from two publicly available chest X-ray datasets {https://github.com/ieee8023/covid-chestxray-dataset},{https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia}}. The classifier effectively distinguishes inflammation in lungs due to COVID-19 and pneumonia (viral and bacterial) from the ones with no infection (normal). We have used multiple pre-trained convolutional backbones as the feature extractor and achieved an overall detection accuracy of 91.2% , 95.3%, 96.7% for the VGG16, ResNet50 and EfficientNetB0 backbones respectively. Additionally, we trained a generative adversarial framework (a cycleGAN) to generate and augment the minority COVID-19 class in our approach. For visual explanations and interpretation purposes, we visualized the regions of input that are important for predictions and a gradient class activation mapping (Grad-CAM) technique is used in the pipeline to produce a coarse localization map of the highlighted regions in the image. This activation map can be used to monitor affected lung regions during disease progression and severity stages.

scholarly journals Ensemble Deep Learning for the Detection of COVID-19 in Unbalanced Chest X-ray Dataset

2021 ◽  
Vol 11 (22) ◽  
pp. 10528
Author(s):  
Khin Yadanar Win ◽  
Noppadol Maneerat ◽  
Syna Sreng ◽  
Kazuhiko Hamamoto
Keyword(s):  
Deep Learning ◽  
Area Under Curve ◽  
Ensemble Classifier ◽  
Saliency Map ◽  
X Rays ◽  
Automated Classification ◽  
Deep Convolutional Neural Networks ◽  
X Ray ◽  
Chest X Ray

The ongoing COVID-19 pandemic has caused devastating effects on humanity worldwide. With practical advantages and wide accessibility, chest X-rays (CXRs) play vital roles in the diagnosis of COVID-19 and the evaluation of the extent of lung damages incurred by the virus. This study aimed to leverage deep-learning-based methods toward the automated classification of COVID-19 from normal and viral pneumonia on CXRs, and the identification of indicative regions of COVID-19 biomarkers. Initially, we preprocessed and segmented the lung regions usingDeepLabV3+ method, and subsequently cropped the lung regions. The cropped lung regions were used as inputs to several deep convolutional neural networks (CNNs) for the prediction of COVID-19. The dataset was highly unbalanced; the vast majority were normal images, with a small number of COVID-19 and pneumonia images. To remedy the unbalanced distribution and to avoid biased classification results, we applied five different approaches: (i) balancing the class using weighted loss; (ii) image augmentation to add more images to minority cases; (iii) the undersampling of majority classes; (iv) the oversampling of minority classes; and (v) a hybrid resampling approach of oversampling and undersampling. The best-performing methods from each approach were combined as the ensemble classifier using two voting strategies. Finally, we used the saliency map of CNNs to identify the indicative regions of COVID-19 biomarkers which are deemed useful for interpretability. The algorithms were evaluated using the largest publicly available COVID-19 dataset. An ensemble of the top five CNNs with image augmentation achieved the highest accuracy of 99.23% and area under curve (AUC) of 99.97%, surpassing the results of previous studies.

scholarly journals Artificial Intelligence Framework for Efficient Detection and Classification of Pneumonia Using Chest Radiography Images

2021 ◽  
Author(s):  
Ali Mohammad Alqudah ◽  
Shoroq Qazan ◽  
Ihssan S. Masad
Keyword(s):  
Artificial Intelligence ◽  
Input Image ◽  
Image Size ◽  
X Ray ◽  
Softmax Classifier ◽  
Non Invasive ◽  
Efficient Detection ◽  
X Ray Imaging ◽  
Chest X Ray

Abstract BackgroundChest diseases are serious health problems that threaten the lives of people. The early and accurate diagnosis of such diseases is very crucial in the success of their treatment and cure. Pneumonia is one of the most widely occurred chest diseases responsible for a high percentage of deaths especially among children. So, detection and classification of pneumonia using the non-invasive chest x-ray imaging would have a great advantage of reducing the mortality rates.ResultsThe results showed that the best input image size in this framework was 64 64 based on comparison between different sizes. Using CNN as a deep features extractor and utilizing the 10-fold methodology the propose artificial intelligence framework achieved an accuracy of 94% for SVM and 93.9% for KNN, a sensitivity of 93.33% for SVM and 93.19% for KNN and a specificity of 96.68% for SVM and 96.60% for KNN.ConclusionsIn this study, an artificial intelligence framework has been proposed for the detection and classification of pneumonia based on chest x-ray imaging with different sizes of input images. The proposed methodology used CNN for features extraction that were fed to two different types of classifiers, namely, SVM and KNN; in addition to the SoftMax classifier which is the default CNN classifier. The proposed CNN has been trained, validated, and tested using a large dataset of chest x-ray images contains in total 5852 images.

scholarly journals Detection of COVID-19 Using Transfer Learning and Grad-CAM Visualization on Indigenously Collected X-ray Dataset

Sensors ◽  
2021 ◽  
Vol 21 (17) ◽  
pp. 5813
Author(s):  
Muhammad Umair ◽  
Muhammad Shahbaz Khan ◽  
Fawad Ahmed ◽  
Fatmah Baothman ◽  
Fehaid Alqahtani ◽  
...  
Keyword(s):  
Transfer Learning ◽  
Input Image ◽  
Fine Tuning ◽  
Feature Maps ◽  
Virus Family ◽  
X Ray ◽  
Normal Chest ◽  
Chest X Ray ◽  
Confusion Matrices

The COVID-19 outbreak began in December 2019 and has dreadfully affected our lives since then. More than three million lives have been engulfed by this newest member of the corona virus family. With the emergence of continuously mutating variants of this virus, it is still indispensable to successfully diagnose the virus at early stages. Although the primary technique for the diagnosis is the PCR test, the non-contact methods utilizing the chest radiographs and CT scans are always preferred. Artificial intelligence, in this regard, plays an essential role in the early and accurate detection of COVID-19 using pulmonary images. In this research, a transfer learning technique with fine tuning was utilized for the detection and classification of COVID-19. Four pre-trained models i.e., VGG16, DenseNet-121, ResNet-50, and MobileNet were used. The aforementioned deep neural networks were trained using the dataset (available on Kaggle) of 7232 (COVID-19 and normal) chest X-ray images. An indigenous dataset of 450 chest X-ray images of Pakistani patients was collected and used for testing and prediction purposes. Various important parameters, e.g., recall, specificity, F1-score, precision, loss graphs, and confusion matrices were calculated to validate the accuracy of the models. The achieved accuracies of VGG16, ResNet-50, DenseNet-121, and MobileNet are 83.27%, 92.48%, 96.49%, and 96.48%, respectively. In order to display feature maps that depict the decomposition process of an input image into various filters, a visualization of the intermediate activations is performed. Finally, the Grad-CAM technique was applied to create class-specific heatmap images in order to highlight the features extracted in the X-ray images. Various optimizers were used for error minimization purposes. DenseNet-121 outperformed the other three models in terms of both accuracy and prediction.

scholarly journals Artificial Intelligence Framework for Efficient Detection and Classification of Pneumonia Using Chest Radiography Images

2020 ◽  
Author(s):  
Ali Mohammad Alqudah ◽  
Shoroq Qazan ◽  
Ihssan S. Masad
Keyword(s):  
Artificial Intelligence ◽  
Input Image ◽  
Image Size ◽  
X Ray ◽  
Softmax Classifier ◽  
Non Invasive ◽  
Efficient Detection ◽  
X Ray Imaging ◽  
Chest X Ray

Abstract BackgroundChest diseases are serious health problems that threaten the lives of people. The early and accurate diagnosis of such diseases is very crucial in the success of their treatment and cure. Pneumonia is one of the most widely occurred chest diseases responsible for a high percentage of deaths especially among children. So, detection and classification of pneumonia using the non-invasive chest x-ray imaging would have a great advantage of reducing the mortality rates.ResultsThe results showed that the best input image size in this framework was 64 64 based on comparison between different sizes. Using CNN as a deep features extractor and utilizing the 10-fold methodology the propose artificial intelligence framework achieved an accuracy of 94% for SVM and 93.9% for KNN, a sensitivity of 93.33% for SVM and 93.19% for KNN and a specificity of 96.68% for SVM and 96.60% for KNN.ConclusionsIn this study, an artificial intelligence framework has been proposed for the detection and classification of pneumonia based on chest x-ray imaging with different sizes of input images. The proposed methodology used CNN for features extraction that were fed to two different types of classifiers, namely, SVM and KNN; in addition to the SoftMax classifier which is the default CNN classifier. The proposed CNN has been trained, validated, and tested using a large dataset of chest x-ray images contains in total 5852 images.

scholarly journals Effective Survey on Detection and Classification of COVID-19 Suspected Individual Using CT scan Images

2021 ◽  
pp. 294-299
Author(s):  
Snehal R. Sambhe ◽  
Dr. Kamlesh A. Waghmare
Keyword(s):  
Ct Scan ◽  
X Rays ◽  
Rt Pcr ◽  
X Ray ◽  
Feature Extractor ◽  
Chest X Ray ◽  
Coronavirus Infection ◽  
Aided Diagnosis ◽  
Excessive Risk

As insufficient testing kits are available, the development of new testing kits for detecting COVID remains an open vicinity of research. It’s impossible to test each and every patient suffering from coronavirus symptoms using the traditional method i.e. RT-PCR. This test requires more time to produce results and have less sensitivity. Detecting feasible coronavirus infection using chest X-Ray may also assist quarantine excessive risk sufferers while testing results are disclosed. A learning model can be built based on CT scan images or Chest X-rays of individuals with higher accuracy. This paper represents a computer-aided diagnosis of COVID 19 infection bases on a feature extractor by using CNN models.

scholarly journals Problems of Deploying CNN Transfer Learning to Detect COVID-19 from Chest X-rays

2020 ◽  
Author(s):  
Taban Majeed ◽  
Rasber Rashid ◽  
Dashti Ali ◽  
Aras Asaad
Keyword(s):  
Transfer Learning ◽  
Input Image ◽  
Machine Learning Algorithms ◽  
Diagnostic Process ◽  
X Rays ◽  
X Ray ◽  
Support Mechanism ◽  
Speed Up ◽  
Chest X Ray ◽  
The Many

AbstractThe Covid-19 first occurs in Wuhan, China in December 2019. After that the virus spread all around the world and at the time of writing this paper the total number of confirmed cases are above 4.7 million with over 315000 deaths. Machine learning algorithms built on radiography images can be used as a decision support mechanism to aid radiologists to speed up the diagnostic process. The aim of this work is to conduct a critical analysis to investigate the applicability of convolutional neural networks (CNNs) for the purpose of COVID-19 detection in chest X-ray images and highlight the issues of using CNN directly on the whole image. To achieve this task, we first use 12-off-the-shelf CNN architectures in transfer learning mode on 3 publicly available chest X-ray databases together with proposing a shallow CNN architecture in which we train it from scratch. Chest X-ray images fed into CNN models without any preprocessing to follow the many of researches using chest X-rays in this manner. Next, a qualitative investigation performed to inspect the decisions made by CNNs using a technique known as class activation maps (CAM). Using CAMs, one can map the activations contributed most to the decision of CNNs back to the original image to visualize the most discriminating regions on the input image.We conclude that CNN decisions should not be taken into consideration, despite their high classification accuracy, until clinicians can visually inspect, and approve, the region(s) of the input image used by CNNs that lead to its prediction.

scholarly journals Chest X-ray classification using Deep learning for automated COVID-19 screening

2020 ◽  
Author(s):  
Ankita Shelke ◽  
Madhura Inamdar ◽  
Vruddhi Shah ◽  
Amanshu Tiwari ◽  
Aafiya Hussain ◽  
...  
Keyword(s):  
Deep Learning ◽  
Early Stage ◽  
Ground Glass Opacity ◽  
Classification Model ◽  
X Rays ◽  
X Ray ◽  
The People ◽  
History Of ◽  
Chest X Ray

AbstractIn today’s world, we find ourselves struggling to fight one of the worst pandemics in the history of humanity known as COVID-2019 caused by a coronavirus. If we detect the virus at an early stage (before it enters the lower respiratory tract), the patient can be treated quickly. Once the virus reaches the lungs, we observe ground-glass opacity in the chest X-ray due to fibrosis in the lungs. Due to the significant differences between X-ray images of an infected and non-infected person, artificial intelligence techniques can be used to identify the presence and severity of the infection. We propose a classification model that can analyze the chest X-rays and help in the accurate diagnosis of COVID-19. Our methodology classifies the chest X-rays into 4 classes viz. normal, pneumonia, tuberculosis (TB), and COVID-19. Further, the X-rays indicating COVID-19 are classified on severity-basis into mild, medium, and severe. The deep learning model used for the classification of pneumonia, TB, and normal is VGG16 with an accuracy of 95.9 %. For the segregation of normal pneumonia and COVID-19, the DenseNet-161 was used with an accuracy of 98.9 %. ResNet-18 worked best for severity classification achieving accuracy up to 76 %. Our approach allows mass screening of the people using X-rays as a primary validation for COVID-19.

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