Genetic Variation of Ethiopian Mustard (Brassica carinata A. Braun) Germplasm in Western Canada

2006 ◽  
Vol 53 (2) ◽  
pp. 297-312 ◽  
Author(s):  
S. I. Warwick ◽  
R. K. Gugel ◽  
T. McDonald ◽  
K. C. Falk
PLoS ONE ◽  
2016 ◽  
Vol 11 (3) ◽  
pp. e0152290 ◽  
Author(s):  
Brij Bihari Sharma ◽  
Pritam Kalia ◽  
Devendra Kumar Yadava ◽  
Dinesh Singh ◽  
Tilak Raj Sharma

2022 ◽  
Author(s):  
Won Cheol Yim ◽  
Mia L. Swain ◽  
Dongna Ma ◽  
Hong An ◽  
Kevin A Bird ◽  
...  

Ethiopian mustard (Brassica carinata) is an ancient crop with significant potential for expanded cultivation as a biodiesel feedstock. The remarkable stress resilience of B. carinata and desirable seed fatty acid profile addresses the ongoing food vs. fuel debate as the crop is productive on marginal lands otherwise not suitable for even closely related species. B. carinata is one of six key Brassica spp. that share three major genomes: three diploid species (AA, BB, CC) that spontaneously hybridized in a pairwise manner, forming three allotetraploid species (AABB, AACC, and BBCC). Each of these genomes has been researched extensively, except for that of B. carinata. In the present study, we report a high-quality, 1.31 Gbp genome with 156.9-fold sequencing coverage for B. carinata var. Gomenzer, completing and confirming the classic Triangle of U, a theory of the evolutionary relationships among these six species that arose almost a century ago. Our assembly provides insights into the genomic features that give rise to B. carinata's superior agronomic traits for developing more climate-resilient Brassica crops with excellent oil production. Notably, we identified an expansion of transcription factor networks and agronomically-important gene families. Completing the Triangle of U comparative genomics platform allowed us to examine the dynamics of polyploid evolution and the role of subgenome dominance in domestication and agronomical improvement.


2021 ◽  
Author(s):  
Xiaoming Song ◽  
Yanping Wei ◽  
Dong Xiao ◽  
Ke Gong ◽  
Pengchuan Sun ◽  
...  

Abstract Ethiopian mustard (Brassica carinata) in the Brassicaceae family possesses many excellent agronomic traits. Here, the high-quality genome sequence of B. carinata is reported. Characterization revealed a genome anchored to 17 chromosomes with a total length of 1.087 Gb and an N50 scaffold length of 60 Mb. Repetitive sequences account for approximately 634 Mb or 58.34% of the B. carinata genome. Notably, 51.91% of 97,149 genes are confined to the terminal 20% of chromosomes as a result of the expansion of repeats in pericentromeric regions. Brassica carinata shares one whole-genome triplication event with the five other species in U’s triangle, a classic model of evolution and polyploidy in Brassica. Brassica carinata was deduced to have formed ∼0.047 Mya, which is slightly earlier than B. napus but later than B. juncea. Our analysis indicated that the relationship between the two subgenomes (BcaB and BcaC) is greater than that between other two tetraploid subgenomes (BjuB and BnaC) and their respective diploid parents. RNA-seq datasets and comparative genomic analysis were used to identify several key genes in pathways regulating disease resistance and glucosinolate metabolism. Further analyses revealed that genome triplication and tandem duplication played important roles in the expansion of those genes in Brassica species. With the genome sequencing of B. carinata completed, the genomes of all six Brassica species in U’s triangle are now resolved. The data obtained from genome sequencing, transcriptome analysis, and comparative genomic efforts in this study provide valuable insights into the genome evolution of the six Brassica species in U’s triangle.


2019 ◽  
Vol 5 (5) ◽  
pp. 205-212 ◽  
Author(s):  
Tesfay Teklehaymanot ◽  
Haijing Wang ◽  
Jianli Liang ◽  
Jian Wu ◽  
Runmao Lin ◽  
...  

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