scholarly journals Karyotype analysis of eight cultivated Allium species

2018 ◽  
Vol 60 (1) ◽  
pp. 1-11 ◽  
Author(s):  
Farzaneh Pordel Maragheh ◽  
Daniel Janus ◽  
Magdalena Senderowicz ◽  
Kamil Haliloglu ◽  
Bozena Kolano
Keyword(s):  
Karyotype Analysis ◽  
Allium Species

scholarly journals Karyomorphological variations in some populations of Allium subgenus Melanocrommyum section Acanthoprason in Iran

2018 ◽  
Vol 19 (2) ◽  
pp. 670-675
Author(s):  
HASSAN MASTALI ◽  
MAHBOOBEH ZARE-MEHRJERDI ◽  
MARYAM NOROUZI ◽  
JALAL REZAEI
Keyword(s):  
Cluster Analysis ◽  
Chromosome Number ◽  
Natural Variation ◽  
Karyotype Analysis ◽  
Group Method ◽  
Allium Species ◽  
Arithmetic Average ◽  
Pair Group ◽  
Upgma Cluster Analysis ◽  
First Time

Mastali H, Zare-Mehrjerdi M, Norouzi M, Rezaei J. 2018. Karyomorphological variations in some populations of Allium subgenus Melanocrommyum section Acanthoprason in Iran. Biodiversitas 19: 670-675. Allium is the largest genus of Amaryllidaceae comprising more than 900 species belonging to 15 subgenera. Iran is reported to be a center of diversity for subgenus Melanocrommyum. Acanthoprason is a section in this subgenus. In this paper, karyomorphological variations of nine populations of four species including Allium derderianum, A. kurdistanicum, A. minutiflorum and A. subakaka of the section Acanthoprason growing in Iran were undertaken using squash technique and 2% (w/v) aceto-orcein stain. All of the populations have the same chromosome numbers 2n = 2x = 16 with the exception in Kochka population of A. derderianum 2n = 18. In the present study, the chromosome number of A. minutiflorum and new chromosome number of A. derderianum were revealed for the first time. Chromosomal characteristics were determined using photographs complemented by cluster analysis. According to dendrogram generated by the unweighted pair-group method with arithmetic average (UPGMA) cluster analysis, nine populations studied were separated into five groups at a cut off value of 5. Karyotype analysis indicated that Allium species studied here generally have metacentric and submetacentric chromosomes and symmetric karyotypes. Results of the present study revealed the natural variation in nine populations of four species of Acantoprason section which can further serve conservation and breeding planning.

Detection Y Chromosome Microdeletions Among Iraq Population in Infertile Patients with Azoospermia and Severe Oligospermia

2019 ◽  
Vol 9 (02) ◽  
Author(s):  
Samah A Hammood ◽  
Alaauldeen S M AL-Sallami ◽  
Saleh M Al-Khafaji
Keyword(s):  
Y Chromosome ◽  
Karyotype Analysis ◽  
Semen Analysis ◽  
Obstructive Azoospermia ◽  
Severe Oligozoospermia ◽  
Infertile Men ◽  
Y Chromosome Microdeletions ◽  
Detailed Evaluation ◽  
Health Organization ◽  
Infertile Patients

Objective: To detection of microdeletions of Y chromosome and study the frequency of microdeletions in infertile men with non-obstructive azoospermia or severe oligozoospermia(Middle Euphrates center)in Iraq population. Material and methods: 153 males were included in the study, the casesweredivided into groups according to the infertility etiology and semen analysis according to Word health organization, the frequencies and the characteristicsof Y chromosome microdeletions were investigated in groups. Multiplex PCR was applied to detect the microdeletions. Results:Y chromosome microdeletion was detected in 42 (40.7%) of 153 cases ,Microdeletions in azoospermia showed more frequently detected 28 (52.8%), followed by severe oligospermia 14 (28 %),Microdeletions in the AZFc region were the most common 12 (22.64%), followed by AZFb 11(20.75%) and AZFa 5(9.43%) in azoospermia compared to severe oligospermisAZFc 6 (12%) AZFb 4 (8 %) and AZFa 4 (8%). Conclusion: Y chromosome microdeletions were detected quite frequently in certain infertility subgroups. Therefore, detailed evaluation of an infertile man by physical examination, semen analysis, hormonal evaluationsand when required, karyotype analysis may predict the patients for whom Y chromosome microdeletionanalysis is necessary and also prevent cost increases. Recommendation: This study emphasizes that analysis of microdeletions should be carried out for all patients with idiopathic azoospermia and severe oligospermia who are candidates for intracytoplasmic sperm injection

scholarly journals Diversification of the Balloon bushcrickets (Orthoptera, Hexacentrinae, Aerotegmina) in the East African mountains

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Beata Grzywacz ◽  
Elżbieta Warchałowska-Śliwa ◽  
Maciej Kociński ◽  
Klaus-Gerhard Heller ◽  
Claudia Hemp
Keyword(s):  
Molecular Phylogeny ◽  
Large Scale ◽  
Diploid Number ◽  
Karyotype Analysis ◽  
Spatial Separation ◽  
Eastern Arc Mountains ◽  
East African ◽  
Habitat Islands ◽  
Extinction Event ◽  
Underlying Processes

AbstractEast African mountains constitute a network of isolated habitat islands among dry savannah and are thus ideal for studying species diversification processes. This study elucidated the phylogenetic and phylogeographic relationships of all bushcricket species comprising the genus Aerotegmina. Our analysis indicated that large-scale climatic and topographic processes in Africa are likely to have driven speciation in this group, and revealed the cytogenetic traits of the species. Molecular phylogeny supported the monophyly of Aerotegmina and showed that the genus probably originated in the old Eastern Arc Mountains of Tanzania and Kenya. Two lineages were distinguished: small- and large-sized species with geographically distinct habitats. The underlying processes are thought to be eight dispersals, ten vicariance events, and one extinction event linked to repeated fragmentation of the African rainforest. Those processes, in conjunction with habitat change, probably also led to the spatial separation of the species into a northern clade with a diploid number of chromosomes 2n = 32 + X0 or 2n = 30 + neo-XY and a southern clade with a reduced number of chromosomes (2n = 28 + X0 or 24 + neo-X1X2Y). Karyotype analysis suggests that Aerotegmina is currently in the process of speciation.

scholarly journals Effect of Allium senescens Extract on Sorafenib Resistance in Hepatocarcinoma Cells

2021 ◽  
Vol 11 (8) ◽  
pp. 3696
Author(s):  
Sohyeon Park ◽  
Yoonjin Park ◽  
Heejong Shin ◽  
Boyong Kim ◽  
Seunggwan Lee
Keyword(s):  
Drug Resistance ◽  
Hepg2 Cells ◽  
High Performance ◽  
Quantitative Polymerase Chain Reaction ◽  
Mitochondrial Apoptosis ◽  
Coumaric Acid ◽  
Allium Species ◽  
Hepatocarcinoma Cells ◽  
Polymerase Chain ◽  
Resistant Cells

Although Allium species are involved in bioactivity, to the best of our knowledge, there is no research on the effects of Allium senescens on drug resistance in hepatocarcinoma. Ultra-high performance liquid chromatography was used to determine the concentration of several bioactive compounds in A. senescens extract; flow cytometry, reverse transcription–quantitative polymerase chain reaction, and siRNA-mediated knockdown to estimate the levels of different markers in HepG2 cells. The quantity of p-coumaric acid in the extract was 4.7291 ± 0.06 μg/mL, and the protein of relevant evolutionary and lymphoid interest (PRELI) in the resistant cells decreased 2.1 times in the presence of p-coumaric acid. The resistant cells strongly downregulated the efflux transporters (ABCB1, ABCC2, and ABCG2) when exposed to the extract or p-coumaric acid and when PRELI was knocked down, in contrast to the influx proteins (OCT-1). Additionally, the extract induced mitochondrial apoptosis and suppressed autophagy. Consequently, the extract and p-coumaric acid attenuated drug resistance of HepG2 cells through the downregulation of PRELI, a key protein associated with the modulation of drug transporter expression, the activation of autophagy, and mitochondrial apoptosis. Our results indicate that A. senescens extract is beneficial in protecting cancer cells against drug resistance and sustaining the efficacy of sorafenib against liver cancer.

scholarly journals A case report and mechanism analysis of a normal phenotype mosaic 47, XXY complicated by paternal iUPD (9) who had a normal PGD result

2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Dan Li ◽  
Yun Wang ◽  
Nan Zhao ◽  
Liang Chang ◽  
Ping Liu ◽  
...  
Keyword(s):  
Case Report ◽  
Karyotype Analysis ◽  
Snp Array ◽  
Uniparental Disomy ◽  
Comparative Genomic ◽  
Klinefelter’S Syndrome ◽  
Mechanism Analysis ◽  
Klinefelter's Syndrome ◽  
Preimplantation Genetic Testing ◽  
First Case

Abstract Background Uniparental disomy (UPD) refers to the situation in which two copies of homologous chromosomes or part of a chromosome originate from the one parent and no copy is supplied by the other parent. Case presentation Here, we reported a woman whose karyotype was 46, XX, t (1;17)(q42;q21), has obtained 5 embryos by intracytoplasmic sperm injection (ICSI) after one cycle of in vitro fertility (IVF). After microarray-based comparative genomic hybridization (array-CGH) for preimplantation genetic testing for chromosomal structural rearrangements (PGT-SR), two embryos were balanced, one balanced embryo was implanted and the patient successfully achieved pregnancy. Amniocentesis was performed at the 19th week of gestation for karyotype analysis and single nucleotide polymorphism (SNP)-array test. The result of karyotype analysis was: mos 47, XXY [19]/46, XY [81]; SNP-array results revealed 46, XY, iUPD (9) pat. After full genetic counseling for mosaic Klinefelter’s syndrome and paternal iUPD (9), the couple decided to continue pregnancy, and the patient gave birth to a healthy boy. The newborn is now 3.5 years old, and developed normally. This case will provide counseling evidences of paternal iUPD (9) for doctors. Conclusions This is the first case report of paternal iUPD9 with mosaic Klinefelter’s syndrome, and no abnormality has been observed during the 3.5-year follow-up. Further observation is required to determine whether the imprinted genes on the chromosomes are pathogenic and whether recessive pathogenetic genes are activated.

scholarly journals Erratum to: Molecular analysis of miscarriage products using multiplex ligation-dependent probe amplification (MLPA): alternative to conventional karyotype analysis

2014 ◽  
Vol 291 (2) ◽  
pp. 355-355
Author(s):  
Ji Won Kim ◽  
Sang Woo Lyu ◽  
Se Ra Sung ◽  
Ji Eun Park ◽  
Dong Hyun Cha ◽  
...  
Keyword(s):  
Molecular Analysis ◽  
Karyotype Analysis ◽  
Dependent Probe

Karyotype analysis of seven cultivated varieties ofCapsicum annuumL.

Caryologia ◽  
2013 ◽  
Vol 66 (1) ◽  
pp. 70-75 ◽  
Author(s):  
S.K. Cheema ◽  
M.R. Pant
Keyword(s):  
Karyotype Analysis
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