IN VITRO TRANSLATION AND TRANSLATIONAL CONTROL IN DICTYOSTELIUM DISCOIDEUM

Author(s):  
B.D. Hames ◽  
B.A. Hodson ◽  
P. Duddy
1983 ◽  
Vol 3 (11) ◽  
pp. 1943-1948
Author(s):  
L J Kelly ◽  
R Kelly ◽  
H L Ennis

Spore germination in the slime mold Dictyostelium discoideum was used as a model to study the developmental regulation of protein and mRNA synthesis. Changes in the synthesis of these macromolecules occur during the transition from dormant spore to amoebae. The study of the mechanisms which regulate the quantity and quality of protein synthesis can best be accomplished with cloned genes. cDNA clones which hybridized primarily with mRNAs from only spores or germinating spores and not with growing amoebae were collected. Three such clones, denoted pLK109, pLK229, and pRK270, were isolated and had inserts of approximately 500, 1,200, and 690 base pairs, respectively. Southern blot hybridization experiments suggested that each of the genes is present in multiple copies in the D. discoideum genome. RNA blot hybridizations were performed to determine the sizes of the respective mRNAs and their developmental regulation. The mRNA that hybridized to pLK109 DNA was present predominantly in spores and at 1 h after germination but was absent in growing amoebae. Its concentration dramatically dropped at 3 h. The mRNA present in spores is apparently larger (approximately 0.5 kilobase) than in the later stages of germination (0.4 kilobase), indicating processing of the RNA during germination. The mRNA that hybridized to pLK229 DNA was approximately 1.0 kilobase and was present in very low amounts during growth. Its concentration rose until 1 h after spore germination and decreased thereafter. pRK270-specific RNA was approximately 2.7 kilobases and was found predominantly at 1 h after germination. It was present in lower concentrations at 2 and 3 h after germination and was absent in spores and amoebae. In vitro translation of mRNA selected from 1-h polyadenylated RNA which was hybridized to pLK109 or pLK229 DNA gave proteins of molecular weights consistent with the sizes of the mRNAs as determined by the RNA blot analysis.


1999 ◽  
Vol 19 (10) ◽  
pp. 6898-6905 ◽  
Author(s):  
Barsanjit Mazumder ◽  
Paul L. Fox

ABSTRACT Ceruloplasmin (Cp) is an acute-phase protein with ferroxidase, amine oxidase, and pro- and antioxidant activities. The primary site of Cp synthesis in human adults is the liver, but it is also synthesized by cells of monocytic origin. We have shown that gamma interferon (IFN-γ) induces the synthesis of Cp mRNA and protein in monocytic cells. We now report that the induced synthesis of Cp is terminated by a mechanism involving transcript-specific translational repression. Cp protein synthesis in U937 cells ceased after 16 h even in the presence of abundant Cp mRNA. RNA isolated from cells treated with IFN-γ for 24 h exhibited a high in vitro translation rate, suggesting that the transcript was not defective. Ribosomal association of Cp mRNA was examined by sucrose centrifugation. When Cp synthesis was high, i.e., after 8 h of IFN-γ treatment, Cp mRNA was primarily associated with polyribosomes. However, after 24 h, when Cp synthesis was low, Cp mRNA was primarily in the nonpolyribosomal fraction. Cytosolic extracts from cells treated with IFN-γ for 24 h, but not for 8 h, contained a factor which blocked in vitro Cp translation. Inhibitor expression was cell type specific and present in extracts of human cells of myeloid origin, but not in several nonmyeloid cells. The inhibitory factor bound to the 3′ untranslated region (3′-UTR) of Cp mRNA, as shown by restoration of in vitro translation by synthetic 3′-UTR added as a “decoy” and detection of a binding complex by RNA gel shift analysis. Deletion mapping of the Cp 3′-UTR indicated an internal 100-nucleotide region of the Cp 3′-UTR that was required for complex formation as well as for silencing of translation. Although transcript-specific translational control is common during development and differentiation and global translational control occurs during responses to cytokines and stress, to our knowledge, this is the first report of translational silencing of a specific transcript following cytokine activation.


1992 ◽  
Vol 164 (1) ◽  
pp. 103-116 ◽  
Author(s):  
G. E. Hofmann ◽  
S. C. Hand

In response to environmental anoxia, embryos of the brine shrimp Artemia franciscana enter a dormant state during which energy metabolism and development are arrested. The intracellular acidification that correlates with this transition into anaerobic dormancy has been linked to the inhibition of protein synthesis in quiescent embryos. In this study, we have addressed the level of control at which a mechanism mediated by intracellular pH might operate to arrest protein synthesis. Two independent lines of evidence suggest that there is an element of translational control when protein synthesis is arrested in dormant embryos. First, as determined by in vitro translation techniques, there were no significant quantitative differences in mRNA pools in dormant as compared to actively developing embryos. In addition, fluorography of the translation products showed that there are no large qualitative changes in mRNA species when embryos become dormant. These data suggest that there was no net degradation of mRNA pools in dormant embryos and that protein synthesis may therefore be controlled more strongly at translation than at transcription. Second, polysome profile studies showed that dormant embryos possess reduced levels of polysomes relative to those found in cells or active embryos. The disaggregation of polysomes is an indication that the initiation step in protein synthesis is disrupted and is further evidence that the mechanism involved in protein synthesis arrest in dormant Artemia involves translational control.


Biomolecules ◽  
2018 ◽  
Vol 8 (4) ◽  
pp. 106 ◽  
Author(s):  
Piero Monaco ◽  
Virginie Marcel ◽  
Jean-Jacques Diaz ◽  
Frédéric Catez

Ribosomal RNA (rRNA) undergoes post-transcriptional modification of over 200 nucleotides, predominantly 2′-O-methylation (2′-O-Me). 2′-O-Methylation protects RNA from hydrolysis and modifies RNA strand flexibility but does not contribute to Watson-Crick base pairing. The contribution of 2′-O-Me to the translational capacity of ribosomes has been established. Yet, how 2′-O-Me participates in ribosome biogenesis and ribosome functioning remains unclear. The development of 2′-O-Me quantitative mapping methods has contributed to the demonstration that these modifications are not constitutive but rather provide heterogeneity to the ribosomal population. Moreover, recent advances in ribosome structure analysis and in vitro translation assays have proven, for the first time, that 2′-O-Me contributes to regulating protein synthesis. This review highlights the recent data exploring the impact of 2′-O-Me on ribosome structure and function, and the emerging idea that the rRNA epitranscriptome is involved in translational control.


2002 ◽  
Vol 22 (18) ◽  
pp. 6375-6383 ◽  
Author(s):  
Megumi Ashizuka ◽  
Takao Fukuda ◽  
Takanori Nakamura ◽  
Kanemitsu Shirasuna ◽  
Kazuhiro Iwai ◽  
...  

ABSTRACT The eukaryotic Y-box-binding protein YB-1 functions in various biological processes, including DNA repair, cell proliferation, and transcriptional and translational controls. To gain further insight into how human YB-1 plays its role in pleiotropic functions, we here used two-hybrid screenings to identify partners of this protein; the results showed that YB-1 itself, iron-regulatory protein 2 (IRP2), and five ribosomal proteins each served as partners to YB-1. We then examined the biological effect of the interaction of YB-1 and IRP2 on translational regulation. Both in vitro binding and coimmunoprecipitation assays showed the direct interaction of YB-1 and IRP2 in the presence of a high concentration of iron. RNA gel shift assays showed that YB-1 reduced the formation of the IRP2-mRNA complex when the iron-responsive element of the ferritin mRNA 5′ untranslated region (UTR) was used as a probe. By using an in vitro translation assay using luciferase mRNA ligated to the ferritin mRNA 5′UTR as a reporter construct, we showed that both YB-1 and IRP2 inhibited the translation of the mRNA. However, coadministration of YB-1 and IRP2 proteins abrogated the inhibition of protein synthesis by each protein. An In vivo coimmunoprecipitation assay showed that IRP2 bound to YB-1 in the presence of iron and a proteasome inhibitor. The direct interaction of YB-1 and IRP2 provides the first evidence of the involvement of YB-1 in the translational regulation of an iron-related protein.


1989 ◽  
Vol 35 (5) ◽  
pp. 573-577
Author(s):  
S. Ramagopal

A distinct poly(A)− RNA sedimenting around 10–12S was identified during spore germination in Dictyostelium discoideum. Activated spores were labeled with [3H]uracil and the poly(A)− RNA was purified from ribosomal particles for analysis. In the spore swelling stage, 40 to 50% of the newly synthesized poly(A)− RNA was 10–12S RNA. This fraction diminished to one-half or one-fourth depending on the labeling period at the stage of amoeba emergence. The 10–12S RNA was associated with both monosomes and polysomes in vivo. Translation in a wheat germ cell-free system and gel electrophoresis demonstrated that the 10–12S RNA coded for a number of polypeptides, some of which were also represented among the in vitro products of poly(A)+ RNA. However, there were seven unique polypeptides (37.5, 28.2, 27.5, 23, 17.7, 17, and 14.2 kilodaltons) encoded exclusively by 10–12S RNA.Key words: cellular slime mold, RNA synthesis, development, poly(A)− mRNA, in vitro translation.


1983 ◽  
Vol 3 (11) ◽  
pp. 1943-1948 ◽  
Author(s):  
L J Kelly ◽  
R Kelly ◽  
H L Ennis

Spore germination in the slime mold Dictyostelium discoideum was used as a model to study the developmental regulation of protein and mRNA synthesis. Changes in the synthesis of these macromolecules occur during the transition from dormant spore to amoebae. The study of the mechanisms which regulate the quantity and quality of protein synthesis can best be accomplished with cloned genes. cDNA clones which hybridized primarily with mRNAs from only spores or germinating spores and not with growing amoebae were collected. Three such clones, denoted pLK109, pLK229, and pRK270, were isolated and had inserts of approximately 500, 1,200, and 690 base pairs, respectively. Southern blot hybridization experiments suggested that each of the genes is present in multiple copies in the D. discoideum genome. RNA blot hybridizations were performed to determine the sizes of the respective mRNAs and their developmental regulation. The mRNA that hybridized to pLK109 DNA was present predominantly in spores and at 1 h after germination but was absent in growing amoebae. Its concentration dramatically dropped at 3 h. The mRNA present in spores is apparently larger (approximately 0.5 kilobase) than in the later stages of germination (0.4 kilobase), indicating processing of the RNA during germination. The mRNA that hybridized to pLK229 DNA was approximately 1.0 kilobase and was present in very low amounts during growth. Its concentration rose until 1 h after spore germination and decreased thereafter. pRK270-specific RNA was approximately 2.7 kilobases and was found predominantly at 1 h after germination. It was present in lower concentrations at 2 and 3 h after germination and was absent in spores and amoebae. In vitro translation of mRNA selected from 1-h polyadenylated RNA which was hybridized to pLK109 or pLK229 DNA gave proteins of molecular weights consistent with the sizes of the mRNAs as determined by the RNA blot analysis.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 4190-4190
Author(s):  
Sébastien Lahousse ◽  
Claude Denis ◽  
Jean-Pierre Kerckaert ◽  
Sylvie Galiègue-Zouitina

Abstract The hematopoiesis-specific RhoH gene was identified in our laboratory, as a BCL6 partner gene (1), in follicular B-non Hodgkin’s lymphoma associated with the recurring t(3;4) chromosomal translocation (2). The RhoH gene encodes a Rho small G protein supposed to be a Rac antagonist (3). The RhoH protein is always in a GTP-bound state (i.e. constitutively active), which suggests a strongly regulated synthesis. This work is aimed at elucidating molecular mechanisms that may regulate this RhoH protein synthesis. The RhoH gene contains one coding exon only (exon 2) preceded by six uncoding exons, and the RhoH transcripts exhibit an important 5′ UTR heterogeneity, especially in the B-lymphoid lineage. This heterogeneity both reflects (i) an use of multiple transcription start sites and (ii) alternative splicing events of some 5′ uncoding exons (4). The present study is devoted to assess the functional relevance of these 5′ uncoding exons in the RhoH protein synthesis. Some of them (exons 1a, 1b and X4) contain an upstream ORF (uORF) sequence. Ten percent of eukaryotic mRNAs, 2/3 of which are involved in the control of cellular growth and differentiation, contain such uORFs within their 5′-UTR sequence. These uORFs are involved in the translational control of these genes (5). RhoH thus provides an additional opportunity to assess the role of uORFs in the translation of a cellular mRNA. Moreover, uORFs have never been implicated in the regulation of any small G family member gene. The data show that the uORFs sequences from the RhoH gene repress the translation of a downstream reporter gene, in transfected hematopoietic cell lines (erythroid, B- and T- lymphoid). The initiation codon from 1a-, 1b-, and X4- uORFs is strongly involved in this phenomenon, as the inhibitory effect was suppressed by an uAUG invalidation. Targeted mutations (premature Stop, silent or mis-sens) within these uORFs sequences were functionally analyzed in the same reporter LUC system. The results led us to distinguish two uORF-mediated translational regulatory mechanisms: (i) an “uAUG dependent / uORF-peptide dependent” mechanism for the 1a- and 1b- uORFs sequences, and (ii) an “uAUG dependent / uORF-peptide independent” mechanism for the X4- uORF. The RhoH transcripts exhibit a 5′ UTR heterogeneity, which might modulate the protein synthesis. Three main RhoH transcripts are expressed in the different hematopoietic lineages: “1a-X4-2”, “1a-1b-X4-2” and “1b-X4-2” (4), therefore the effects of the 1a-, 1b-, and X4- uORFs were investigated in combination (1a+X4; 1a+1b+X4; 1b+X4), as in the RhoH transcripts. The results convinced us to propose an uORF-mediated translational regulatory mechanism, which is based on a combinatory effect (synergy or antagonism) of three uORFs. This mechanism is called: “translational lock-unlock” model of the RhoH gene. In vitro translation experiments aimed at validating this model will be presented.


1991 ◽  
Vol 100 (2) ◽  
pp. 357-364
Author(s):  
F. P. GIBSON ◽  
T. SCHOFIELD ◽  
B. D. HAMES

Spore coat protein synthesis in submerged pseudoplasmodia of Dictyostelium discoideum is dependent on the presence of a low relative molecular mass extracellular factor, SPIF, the activity of which can be mimicked by methionine. In vitro translation and northern blot analysis revealed that the level of spore coat protein mRNA in pseudoplasmodia incubated in the absence of methionine is little different from that in its presence. Furthermore, nogalamycin, a potent inhibitor of RNA synthesis, does not prevent the regulation of spore coat protein synthesis by methionine. These data suggest that the regulatory step is probably at the translational level. The proportion of total ribosomes associated in polysomes in pseudoplasmodia incubated in the absence of methionine is substantially lower than in its presence indicating a relative decrease in the number of translationally active mRNAs. However, measurements of the average polysome size and ribosome transit time in pseudoplasmodia initiated in the presence or absence of methionine show that the initiation rate of protein synthesis is essentially identical in both situations.


2003 ◽  
Vol 23 (5) ◽  
pp. 1509-1519 ◽  
Author(s):  
Prabha Sampath ◽  
Barsanjit Mazumder ◽  
Vasudevan Seshadri ◽  
Paul L. Fox

ABSTRACT Transcript-selective translational control of eukaryotic gene expression is often directed by a structural element in the 3′ untranslated region (3′-UTR) of the mRNA. In the case of ceruloplasmin (Cp), induced synthesis of the protein by gamma interferon (IFN-γ) in U937 monocytic cells is halted by a delayed translational silencing mechanism requiring the binding of a cytosolic inhibitor to the Cp 3′-UTR. Silencing requires the essential elements of mRNA circularization, i.e., eukaryotic initiation factor 4G, poly(A)-binding protein, and poly(A) tail. We here determined the minimal silencing element in the Cp 3′-UTR by progressive deletions from both termini. A minimal, 29-nucleotide (nt) element was determined by gel shift assay to be sufficient for maximal binding of the IFN-γ-activated inhibitor of translation (GAIT), an as-yet-unidentified protein or complex. The interaction was shown to be functional by an in vitro translation assay in which the GAIT element was used as a decoy to overcome translational silencing. Mutation analysis showed that the GAIT element contained a 5-nt terminal loop, a weak 3-bp helix, an asymmetric internal bulge, and a proximal 6-bp helical stem. Two invariant loop residues essential for binding activity were identified. Ligation of the GAIT element immediately downstream of a luciferase reporter conferred the translational silencing response to the heterologous transcript in vitro and in vivo; a construct containing a nonbinding, mutated GAIT element was ineffective. Translational silencing of Cp, and possibly other transcripts, mediated by the GAIT element may contribute to the resolution of the local inflammatory response following cytokine activation of macrophages.


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