scholarly journals High-throughput phenotyping of a large tomato collection under water deficit: Combining UAVs’ remote sensing with conventional leaf-level physiologic and agronomic measurements

2022 ◽  
Vol 260 ◽  
pp. 107283
Author(s):  
Mateu Fullana-Pericàs ◽  
Miquel À. Conesa ◽  
Jorge Gago ◽  
Miquel Ribas-Carbó ◽  
Jeroni Galmés
2020 ◽  
Author(s):  
Thierry Balliau ◽  
Harold Duruflé ◽  
Nicolas Blanchet ◽  
Mélisande Blein-Nicolas ◽  
Nicolas B. Langlade ◽  
...  

AbstractThis article describes how the proteomic data were produced on sunflower plants subjected to water deficit. Twenty-four sunflower genotypes were selected to represent genetic diversity within cultivated sunflower. They included both inbred lines and their hybridsWater deficit was applied to plants in pots at the vegetative stage using the high-throughput phenotyping platform Heliaphen. Here, we provide proteomic data from sunflower leaves corresponding to the identification of 3062 proteins and the quantification of 1211 of them in these 24 genotypes grown in two watering conditions. These data differentiate both treatment and the different genotypes and constitute a valuable resource to the community to study adaptation of crops to drought and the molecular basis of heterosis.


Rice ◽  
2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Paulo Henrique Ramos Guimarães ◽  
Isabela Pereira de Lima ◽  
Adriano Pereira de Castro ◽  
Anna Cristina Lanna ◽  
Patrícia Guimarães Santos Melo ◽  
...  

Abstract Background The root system plays a major role in plant growth and development and root system architecture is reported to be the main trait related to plant adaptation to drought. However, phenotyping root systems in situ is not suited to high-throughput methods, leading to the development of non-destructive methods for evaluations in more or less controlled root environments. This study used a root phenotyping platform with a panel of 20 japonica rice accessions in order to: (i) assess their genetic diversity for a set of structural and morphological root traits and classify the different types; (ii) analyze the plastic response of their root system to a water deficit at reproductive phase and (iii) explore the ability of the platform for high-throughput phenotyping of root structure and morphology. Results High variability for the studied root traits was found in the reduced set of accessions. Using eight selected traits under irrigated conditions, five root clusters were found that differed in root thickness, branching index and the pattern of fine and thick root distribution along the profile. When water deficit occurred at reproductive phase, some accessions significantly reduced root growth compared to the irrigated treatment, while others stimulated it. It was found that root cluster, as defined under irrigated conditions, could not predict the plastic response of roots under drought. Conclusions This study revealed the possibility of reconstructing the structure of root systems from scanned images. It was thus possible to significantly class root systems according to simple structural traits, opening up the way for using such a platform for medium to high-throughput phenotyping. The study also highlighted the uncoupling between root structures under non-limiting water conditions and their response to drought.


2017 ◽  
Vol 44 (1) ◽  
pp. 35 ◽  
Author(s):  
Anaëlle Dambreville ◽  
Mélanie Griolet ◽  
Gaëlle Rolland ◽  
Myriam Dauzat ◽  
Alexis Bédiée ◽  
...  

Following the recent development of high-throughput phenotyping platforms for plant research, the number of individual plants grown together in a same experiment has raised, sometimes at the expense of pot size. However, root restriction in excessively small pots affects plant growth and carbon partitioning, and may interact with other stresses targeted in these experiments. In work reported here, we investigated the interactive effects of pot size and soil water deficit on multiple growth-related traits from the cellular to the whole-plant scale in oilseed rape (Brassica napus L.). The effects of pot size on responses to water deficit and allometric relationships revealed strong, multilevel interactions between pot size and watering regime. Notably, water deficit increased the root : shoot ratio in large pots, but not in small pots. At the cellular scale, water deficit decreased epidermal leaf cell area in large pots, but not in small pots. These results were consistent with changes in the level of endoreduplication factor in leaf cells. Our study illustrates the disturbing interaction of pot size with water deficit and raises the need to carefully consider this factor in the frame of the current development of high-throughput phenotyping experiments.


2017 ◽  
Author(s):  
F. Baret ◽  
S. Madec ◽  
K. Irfan ◽  
J. Lopez ◽  
A. Comar ◽  
...  

AbstractLeaf rolling in maize crops is one of the main plant reactions to water stress that may be visually scored in the field. However, the leaf scoring did not reach the high-throughput desired by breeders for efficient phenotyping. This study investigates the relationship between leaf rolling score and the induced canopy structure changes that may be accessed by high-throughput remote sensing techniques.Results gathered over a field phenotyping platform run in 2015 and 2016 show that leaf starts to roll for the water stressed conditions around 9:00 and reaches its maximum around 15:00. Conversely, genotypes conducted under well watered conditions do not show any significant rolling during the same day. Leaf level rolling was very strongly correlated to canopy structure changes as described by the fraction of intercepted radiation fIPARWS derived from digital hemispherical photography. The changes in fIPARWS were stronly correlated (R2=0.86, n=50) to the leaf level rolling visual score. Further, a very good consistency of the genotype ranking of the fIPARWS changes during the day was found (ρ=0.62). This study demonstrating the strong coordination between leaf level rolling and its impact on canopy structure changes poses the basis for new high-throughput remote sensing methods to quantify this water stress trait.HighlighThe diurnal dynamics of leaf rolling scored visually is strongly related to canopy structure changes that can be documented using Digital hemispherical photography. Consequences for high-throughput field phenotyping are discussed


Author(s):  
Nathan T Hein ◽  
Ignacio A Ciampitti ◽  
S V Krishna Jagadish

Abstract Flowering and grain-filling stages are highly sensitive to heat and drought stress exposure, leading to significant loss in crop yields. Therefore, phenotyping to enhance resilience to these abiotic stresses is critical for sustaining genetic gains in crop improvement programs. However, traditional methods for screening traits related to these stresses are slow, laborious, and often expensive. Remote sensing provides opportunities to introduce low-cost, less-biased, high-throughput phenotyping methods to capture large genetic diversity to facilitate enhancement of stress resilience in crops. This review focuses on four key physiological traits or processes that are critical in understanding crop responses to drought and heat stress during reproductive and grain-filling periods. Specifically, these traits include: i) time-of-day of flowering, to escape these stresses during flowering, ii) optimizing photosynthetic efficiency, iii) storage and translocation of water-soluble carbohydrates, and iv) yield and yield components to provide in-season yield estimates. An overview of current advances in remote sensing in capturing these traits, limitations with existing technology and future direction of research to develop high-throughput phenotyping approaches for these traits are discussed in this review. In the future, phenotyping these complex traits will require sensor advancement, high-quality imagery combined with machine learning methods, and efforts in transdisciplinary science to foster integration across disciplines.


OCL ◽  
2021 ◽  
Vol 28 ◽  
pp. 12
Author(s):  
Thierry Balliau ◽  
Harold Duruflé ◽  
Nicolas Blanchet ◽  
Mélisande Blein-Nicolas ◽  
Nicolas B. Langlade ◽  
...  

This article describes a proteomic data set produced from sunflower plants subjected to water deficit. Twenty-four sunflower genotypes were selected to represent genetic diversity within cultivated sunflower. They included both inbred lines and their hybrids. Water deficit was applied to plants in pots at the vegetative stage using the high-throughput phenotyping platform Heliaphen. We present here the identification of 3062 proteins and the quantification of 1211 of them in the leaves of the 24 genotypes grown under two watering conditions. These data allow the study of both the effects of genetic variations and watering conditions. They constitute a valuable resource for the community to study adaptation of crops to drought and the molecular basis of heterosis.


OCL ◽  
2020 ◽  
Vol 27 ◽  
pp. 48
Author(s):  
Louise Gody ◽  
Harold Duruflé ◽  
Nicolas Blanchet ◽  
Clément Carré ◽  
Ludovic Legrand ◽  
...  

This article describes how the transcriptomic data were produced on sunflower plants subjected to water deficit. Twenty-four sunflower (Helianthus annuus) genotypes were selected to represent genetic diversity within cultivated sunflower and included both inbred lines and their hybrids. Drought stress was applied to plants in pots at the vegetative stage using the high-throughput phenotyping platform Heliaphen. Here, we provide transcriptomic data from sunflower leaves. These data differentiate both plant water status and the different genotypes. They constitute a valuable resource to the community to study adaptation of crops to drought and the transcriptomic basis of heterosis.


2011 ◽  
Author(s):  
E. Kyzar ◽  
S. Gaikwad ◽  
M. Pham ◽  
J. Green ◽  
A. Roth ◽  
...  

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