Abstract. A multi-year ocean glider dataset, obtained along a representative cross-shelf transect
along the Rottnest continental shelf, south-west Australia, was used to characterise the
seasonal and inter-annual variability of water column properties (temperature, salinity,
and chlorophyll fluorescence distribution). All three variables showed distinct seasonal
and inter-annual variations that were related to local and basin-scale ocean atmosphere
processes. Controlling influences for the variability were attributed to forcing from two
spatial scales: (1) the local scale (due to Leeuwin Current and dense shelf water
cascades, DSWC) and (2) the basin scale (El Niño–Southern Oscillation, ENSO,
events). In spring and summer, inner-shelf waters were well mixed due to strong wind
mixing, and deeper waters (>50 m) were vertically stratified in temperature that
contributed to the presence of a subsurface chlorophyll maximum (SCM). On the inner
shelf, chlorophyll fluorescence concentrations were highest in autumn and winter. DSWCs
were also the main physical feature during autumn and winter. Chlorophyll fluorescence
concentration was higher closer to the seabed than at the surface in spring, summer, and
autumn. The seasonal patterns coincided with changes in the wind field (weaker winds in
autumn) and air–sea fluxes (winter cooling and summer evaporation). Inter-annual
variation was associated with ENSO events. Lower temperatures, higher salinity, and
higher chlorophyll fluorescence (>1 mg m−3) were associated with the El Niño
event in 2010. During the strong La Niña event in 2011, temperatures increased and
salinity and chlorophyll fluorescence decreased (<1 mg m−3). It is concluded
that the observed seasonal and inter-annual variabilities in chlorophyll fluorescence
concentrations were related to the changes in physical forcing (wind forcing, Leeuwin
Current, and air–sea heat and moisture fluxes).