An on-lattice agent-based Monte Carlo model simulating the growth kinetics of multicellular tumor spheroids

2020 ◽  
Vol 77 ◽  
pp. 194-203
Author(s):  
S. Ruiz-Arrebola ◽  
A.M. Tornero-López ◽  
D. Guirado ◽  
M. Villalobos ◽  
A.M. Lallena
1992 ◽  
Vol 280 ◽  
Author(s):  
J. F. Egler ◽  
N. Otsuka ◽  
K. Mahalingam

ABSTRACTGrowth kinetics on non-singular surfaces were studied by Monte Carlo simulations. In contrast to the growth on singular and vicinal surfaces, the sticking coefficient on the non-singular surfaces was found to decrease with increase of the surface roughness. Simulations of annealing processes showed that surface diffusion of atoms leads to a stationary surface roughness, which is explained by multiple configurations having the lowest energy in the non-singular surface.


1992 ◽  
Vol 291 ◽  
Author(s):  
Zhigang Xi ◽  
Bulbul Chakraborty

ABSTRACTWe study the kinetics of ordering in Cu3Au using a model Hamiltonian derived from the effective medium theory of chemical bonding. Monte Carlo simulations are used to investigate universal and non-universal features of the growth kinetics. Anisotropic scaling of the structure factor is observed in late-stage growth of ordered domains. The anisotropy is a non-universal feature determined by the details of the microscopic model, and we find that the anisotropy observed in the simulations is in excellent agreement with experiments on Cu3Au. The simulations are discussed in the context of theories of unstable growth. To our knowledge, this is the first study of kinetics in a realistic model Hamiltonian describing the material-specific properties of Cu3Au.


2018 ◽  
Vol 24 (3) ◽  
pp. 193-202 ◽  
Author(s):  
Karl K. Sabelfeld ◽  
Georgy Eremeev

Abstract We develop in this paper a hybrid kinetic Monte Carlo and continuous thermodynamically based model for the simulation of homogeneous nucleation under burst regime when a long incubation time is followed by rapid nucleation of stable nuclei. In this model we assume that the kinetics of particle nucleation and disaggregation is governed by a Smoluchowski equation while the size of a stable nuclei is taken from the thermodynamic theory of nucleation with varying supersaturation under metastable conditions. We show that the Smoluchowski equations without the metastable conditions cannot describe the regime of burst nucleation showing the following general feature: the longer the incubation time, the slower the nucleation rate even if a multiple disaggregation is assumed. In contrast, a combined hybrid Monte Carlo and metastable thermodynamic model suggested is able to predict a long incubation time followed by rapid nucleation regime. A series of numerical simulations presented supports this conclusion.


2021 ◽  
Vol 11 (11) ◽  
pp. 5241
Author(s):  
Samuel Ruiz-Arrebola ◽  
Damián Guirado ◽  
Mercedes Villalobos ◽  
Antonio M. Lallena

Purpose:To analyze the capabilities of different classical mathematical models to describe the growth of multicellular spheroids simulated with an on-lattice agent-based Monte Carlo model that has already been validated. Methods: The exponential, Gompertz, logistic, potential, and Bertalanffy models have been fitted in different situations to volume data generated with a Monte Carlo agent-based model that simulates the spheroid growth. Two samples of pseudo-data, obtained by assuming different variability in the simulation parameters, were considered. The mathematical models were fitted to the whole growth curves and also to parts of them, thus permitting to analyze the predictive power (both prospective and retrospective) of the models. Results: The consideration of the data obtained with a larger variability of the simulation parameters increases the width of the χ2 distributions obtained in the fits. The Gompertz model provided the best fits to the whole growth curves, yielding an average value of the χ2 per degree of freedom of 3.2, an order of magnitude smaller than those found for the other models. Gompertz and Bertalanffy models gave a similar retrospective prediction capability. In what refers to prospective prediction power, the Gompertz model showed by far the best performance. Conclusions: The classical mathematical models that have been analyzed show poor prediction capabilities to reproduce the MTS growth data not used to fit them. Within these poor results, the Gompertz model proves to be the one that better describes the growth data simulated. The simulation of the growth of tumors or multicellular spheroids permits to have follow-up periods longer than in the usual experimental studies and with a much larger number of samples: this has permitted performing the type of analysis presented here.


2018 ◽  
Vol 46 (S1) ◽  
pp. 32-42 ◽  
Author(s):  
Christopher Okhravi ◽  
Simone Callegari ◽  
Steve McKeever ◽  
Carl Kronlid ◽  
Enrico Baraldi ◽  
...  

We design an agent based Monte Carlo model of antibiotics research and development (R&D) to explore the effects of the policy intervention known as Market Entry Reward (MER) on the likelihood that an antibiotic entering pre-clinical development reaches the market. By means of sensitivity analysis we explore the interaction between the MER and four key parameters: projected net revenues, R&D costs, venture capitalists discount rates, and large pharmaceutical organizations' financial thresholds. We show that improving revenues may be more efficient than reducing costs, and thus confirm that this pull-based policy intervention effectively stimulates antibiotics R&D.


2000 ◽  
Vol 316 (3-4) ◽  
pp. 311-317 ◽  
Author(s):  
S. Longo ◽  
D. Bruno ◽  
M. Capitelli ◽  
P. Minelli

2009 ◽  
Vol 193 ◽  
pp. 012124
Author(s):  
G Tarel ◽  
V Savona ◽  
A Badolato ◽  
M Winger ◽  
T Volz ◽  
...  

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