Enhancing the thermostability of phospholipase D from Streptomyces halstedii by directed evolution and elucidating the mechanism of a key amino acid residue using molecular dynamics simulation

2020 ◽  
Vol 164 ◽  
pp. 3065-3074
Author(s):  
Lin Huang ◽  
Jieying Ma ◽  
Jingcheng Sang ◽  
Nan Wang ◽  
Shuang Wang ◽  
...  
RSC Advances ◽  
2017 ◽  
Vol 7 (46) ◽  
pp. 28945-28950 ◽  
Author(s):  
Mingbing Wu ◽  
Wei Li ◽  
Song Li ◽  
Guang Feng

Capacitance–electric potential curves of amino acid ionic liquid electrolyte-based supercapacitors.


2021 ◽  
Vol 12 ◽  
Author(s):  
Zheng Zequn ◽  
Lian Jiangfang

The rapidly activating delayed rectifier K+ current generated by the cardiac hERG potassium channel encoded by KCNH2 is the most important reserve current for cardiac repolarization. The unique inward rectification characteristics of the hERG channel depend on the gating regulation, which involves crucial structural domains and key single amino acid residues in the full-length hERG channel. Identifying critical molecules involved in the regulation of gating kinetics for the hERG channel requires high-resolution structures and molecular dynamics simulation models. Based on the latest progress in hERG structure and molecular dynamics simulation research, summarizing the molecules involved in the changes in the channel state helps to elucidate the unique gating characteristics of the channel and the reason for its high affinity to cardiotoxic drugs. In this review, we aim to summarize the significant advances in understanding the voltage gating regulation of the hERG channel based on its structure obtained from cryo-electron microscopy and computer simulations, which reveal the critical roles of several specific structural domains and amino acid residues.


RSC Advances ◽  
2014 ◽  
Vol 4 (96) ◽  
pp. 54096-54108 ◽  
Author(s):  
Arthit Nueangaudom ◽  
Kiattisak Lugsanangarm ◽  
Somsak Pianwanit ◽  
Sirirat Kokpol ◽  
Nadtanet Nunthaboot ◽  
...  

The mechanism of photoinduced electron transfer from benzoate and aromatic amino acids to the excited isoalloxazine in the d-amino acid oxidase–benzoate complex dimer was studied using molecular dynamics simulation and an electron transfer theory.


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