scholarly journals OPT gene family analysis of potato (Solanum tuberosum) responding to heavy metal stress: Comparative omics and co-expression networks revealed the underlying core templates and specific response patterns

2021 ◽  
Author(s):  
Danxia Wu ◽  
Guandi He ◽  
Weijun Tian ◽  
Muhammad Saleem ◽  
Dandan Li ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Solanum Tuberosum ◽  
Gene Family ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Specific Response ◽  
Response Patterns ◽  
Family Analysis

scholarly journals Genome-Wide Identification of Metal Tolerance Genes in Potato (Solanum Tuberosum): Response to Two Heavy Metal Stress

2021 ◽  
Author(s):  
Dandan Li ◽  
Guandi He ◽  
Weijun Tian ◽  
Yun Huang ◽  
Lulu Meng ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Solanum Tuberosum ◽  
Gene Family ◽  
Transmembrane Domain ◽  
Metal Tolerance ◽  
Cadmium Stress ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Zinc Stress

Abstract Metal tolerance proteins play an important role in the transport and tolerance of divalent heavy metals in plant species. Potatoes are an important food crop whose yields can be deeply affected by heavy metals. However, there is a lack of information concerning the members and function of the MTP gene family in Solanum tuberosum. In this study, we identified and screened 11 MTP genes in potatoes which we named as StMTP1 to StMTP11 based on their positions on the chromosomes. Phylogenetic analysis divided these 11 MTP genes into three subfamilies; Mn-MTP, Zn-MTP and Zn/Fe-MTP. HXXXD and DXXXD conserved motifs were found on or around the transmembrane domain II and transmembrane domain V of these proteins. The highly conserved histidine and aspartic acid residues may be related to the transport of metal ions. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis showed that the expression levels of StMTP9 and StMTP10 in leaf tissues increased by around 24-fold following cadmium stress for 24 hours. We hypothesize that StMTP9 and StMTP10 respond to cadmium stress. StMTP11 showed the highest level of expression in stem tissues after 6 hours of zinc stress at more than 13 times the level of expression in controls indicating that StMTP11 is more sensitive to zinc stress. In summary, our results further the current understanding of the molecular mechanisms regulated by members of the MTP gene family in plant responses to heavy metal stress.

scholarly journals Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Medicago truncatula Under a Broad Range of Heavy Metal Stress

2021 ◽  
Vol 12 ◽  
Author(s):  
Ahmed H. El-Sappah ◽  
Rania G. Elbaiomy ◽  
Ahmed S. Elrys ◽  
Yu Wang ◽  
Yumin Zhu ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Gene Ontology ◽  
Gene Family ◽  
Medicago Truncatula ◽  
Metal Ion ◽  
Metal Tolerance ◽  
Functional Characterization ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Gene Similarity

Metal tolerance proteins (MTPs) encompass plant membrane divalent cation transporters to specifically participate in heavy metal stress resistance and mineral acquisition. However, the molecular behaviors and biological functions of this family in Medicago truncatula are scarcely known. A total of 12 potential MTP candidate genes in the M. truncatula genome were successfully identified and analyzed for a phylogenetic relationship, chromosomal distributions, gene structures, docking analysis, gene ontology, and previous gene expression. M. truncatula MTPs (MtMTPs) were further classified into three major cation diffusion facilitator (CDFs) groups: Mn-CDFs, Zn-CDFs, and Fe/Zn-CDFs. The structural analysis of MtMTPs displayed high gene similarity within the same group where all of them have cation_efflux domain or ZT_dimer. Cis-acting element analysis suggested that various abiotic stresses and phytohormones could induce the most MtMTP gene transcripts. Among all MTPs, PF16916 is the specific domain, whereas GLY, ILE, LEU, MET, ALA, SER, THR, VAL, ASN, and PHE amino acids were predicted to be the binding residues in the ligand-binding site of all these proteins. RNA-seq and gene ontology analysis revealed the significant role of MTP genes in the growth and development of M. truncatula. MtMTP genes displayed differential responses in plant leaves, stems, and roots under five divalent heavy metals (Cd2+, Co2+, Mn2+, Zn2+, and Fe2+). Ten, seven, and nine MtMTPs responded to at least one metal ion treatment in the leaves, stems, and roots, respectively. Additionally, MtMTP1.1, MtMTP1.2, and MtMTP4 exhibited the highest expression responses in most heavy metal treatments. Our results presented a standpoint on the evolution of MTPs in M. truncatula. Overall, our study provides a novel insight into the evolution of the MTP gene family in M. truncatula and paves the way for additional functional characterization of this gene family.

scholarly journals Genome-Wide Identification of the HMA Gene Family and Expression Analysis under Cd Stress in Barley

Plants ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1849
Author(s):  
Chiran Zhang ◽  
Qianhui Yang ◽  
Xiaoqin Zhang ◽  
Xian Zhang ◽  
Tongyuan Yu ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Phylogenetic Analysis ◽  
Gene Family ◽  
Expression Analysis ◽  
Stress Resistance ◽  
Agricultural Development ◽  
Structural Characteristics ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Cd Stress

In recent years, cadmium (Cd) pollution in soil has increased with increasing industrial activities, which has restricted crop growth and agricultural development. The heavy metal ATPase (HMA) gene family contributes to heavy metal stress resistance in plants. In this study, 21 HMA genes (HvHMAs) were identified in barley (Hordeumvulgare L., Hv) using bioinformatics methods. Based on phylogenetic analysis and domain distribution, barley HMA genes were divided into five groups (A–E), and complete analyses were performed in terms of physicochemical properties, structural characteristics, conserved domains, and chromosome localization. The expression pattern analysis showed that most HvHMA genes were expressed in barley and exhibited tissue specificity. According to the fragments per kilobase of exon per million fragments values in shoots from seedlings at the 10 cm shoot stage (LEA) and phylogenetic analysis, five HvHMA genes were selected for expression analysis under Cd stress. Among the five HvHMA genes, three (HvHMA1, HvHMA3, and HvHMA4) were upregulated and two (HvHMA2 and HvHMA6) were downregulated following Cd treatments. This study serves as a foundation for clarifying the functions of HvHMA proteins in the heavy metal stress resistance of barley.

scholarly journals Genome-Wide Identification of MATE Gene Family in Potato (Solanum tuberosum L.) and Expression Analysis in Heavy Metal Stress

2021 ◽  
Vol 12 ◽  
Author(s):  
Yun Huang ◽  
Guandi He ◽  
Weijun Tian ◽  
Dandan Li ◽  
Lulu Meng ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Gene Family ◽  
Expression Analysis ◽  
Molecular Mechanisms ◽  
Solanum Tuberosum L ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Expression Levels ◽  
Genome Wide ◽  
A Genome

A genome-wide identification and expression analysis of multidrug and toxic compound extrusion (MATE) gene family in potato was carried out to explore the response of MATE proteins to heavy meta stress. In this study, we identified 64 MATE genes from potato genome, which are located on 12 chromosomes, and are divided into I–IV subfamilies based on phylogenetic analysis. According to their order of appearance on the chromosomes, they were named from StMATE1–64. Subcellular location prediction showed that 98% of them are located on the plasma membrane as transporters. Synteny analysis showed that five pairs of collinearity gene pairs belonged to members of subfamily I and subfamily II had two pairs indicating that the duplication is of great significance to the evolution of genes in subfamilies I and II. Gene exon–intron structures and motif composition are more similar in the same subfamily. Every StMATE gene contained at least one cis-acting element associated with regulation of hormone transport. The relative expression levels of eight StMATE genes were significantly upregulated under Cu2+ stress compared with the non-stress condition (0 h). After Cd2+ stress for 24 h, the expression levels of StMATE33 in leaf tissue were significantly increased, indicating its crucial role in the process of Cd2+ stress. Additionally, StMATE18/60/40/33/5 were significantly induced by Cu2+ stress, while StMATE59 (II) was significantly induced by Ni2+ stress. Our study initially explores the biological functions of StMATE genes in the regulation of heavy metal stress, further providing a theoretical basis for studying the subsequent molecular mechanisms in detail.

scholarly journals Salicylic acid in combination with kinetin or calcium ameliorates heavy metal stress in Phaseolus vulgaris plant

2021 ◽  
pp. 100182
Author(s):  
Radwan Khalil ◽  
Samia Haroun ◽  
Fardous Bassyoini ◽  
Aziza Nagah ◽  
Mohammad Yusuf
Keyword(s):  
Heavy Metal ◽  
Salicylic Acid ◽  
Phaseolus Vulgaris ◽  
Heavy Metal Stress ◽  
Metal Stress

Effects of Metal Stress on Visible/Near-Infrared Reflectance Spectra of Vegetation

2011 ◽  
Vol 347-353 ◽  
pp. 2735-2738 ◽  
Author(s):  
Guang Yu Chi ◽  
Yi Shi ◽  
Xin Chen ◽  
Jian Ma ◽  
Tai Hui Zheng
Keyword(s):  
Heavy Metal ◽  
Structural Changes ◽  
Near Infrared ◽  
Leaf Surface ◽  
Spectral Response ◽  
Spectral Characteristics ◽  
Surface Characteristics ◽  
Heavy Metal Stress ◽  
Metal Stress ◽  
Near Infrared Reflectance

Vegetation which suffers from heavy metal stresses can cause changes of leaf color, shape and structural changes. The spectral characteristics of vegetation leaves is related to leaf thickness, leaf surface characteristics, the content of water, chlorophyll and other pigments. So the eco-physiology changes of plants can be reflected by spectral reflectance. Studies on the spectral response of vegetation to heavy metal stress can provide a theoretical basis for remote sensing monitoring of metal pollution in soils. In recent decades, there are substantial amounts of literature exploring the effects of heavy metals on vegetation spectra.

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