RNA-Seq based global transcriptome analysis of rice unravels the key players associated with brown planthopper resistance

2021 ◽  
Vol 191 ◽  
pp. 118-128
Author(s):  
Vanisri Satturu ◽  
Hima Bindu Kudapa ◽  
Pandiyan Muthuramalingam ◽  
Rama Gopal Varma Nadimpalli ◽  
Jhansi Lakshmi Vattikuti ◽  
...  
2021 ◽  
Author(s):  
Han Qi Tan ◽  
Sreekanth Palyam ◽  
Jagadeesha Gouda ◽  
Prakash Kumar ◽  
Santhosh Kumar Chellian

Abstract The brown planthopper (BPH) is the leading cause of insect damage to rice plants. It has caused profound losses in rice production since the late 1970’s and continues to be a major pest problem. Therefore, there is an urgent need to discover new BPH resistance genes to ensure the successful production of rice. Here, a new BPH resistance source provided by SeedWorks International Pvt. Ltd., SWD10, was used for this purpose. A total of 232 F2 progenies were genotyped with 216 polymorphic markers. Results revealed two dominant QTLs located on the short and long arms of chromosome 4. These QTLs are referred to as BPH41 and BPH42, respectively. BPH resistance mechanism test revealed that antibiosis and antixenosis mechanisms both play a role in BPH resistance conferred by these two QTLs. To further reduce the size of each QTL, 14,368 recombinant lines were screened, and the QTLs were delimited between markers SWRm_01617 and SWRm_01522 for BPH41, and SWRm_01695 and SWRm_00328 for BPH42. Additionally, using RNA-seq data of lines containing the QTLs, we further shortlisted four and three gene candidates for BPH41 and BPH42, respectively. Differential gene expression analysis of lines containing the QTLs suggested that SWD10 BPH resistance is contributed by the plant’s innate immunity and the candidate genes may be part of the rice innate immunity pathway. The newly identified QTLs are currently being utilized for breeding BPH resistant rice varieties and hybrids.


2016 ◽  
Vol 42 (3) ◽  
pp. 353 ◽  
Author(s):  
Zhao DENG ◽  
Shao-Jie SHI ◽  
Hui-Ying WANG ◽  
Xin-Xin SHANG-GUAN ◽  
Bing-Fang LIU ◽  
...  

2016 ◽  
Vol 42 (10) ◽  
pp. 1487 ◽  
Author(s):  
Min GE ◽  
Yuan-Da LYU ◽  
Ti-Fu ZHANG ◽  
Ling ZHOU ◽  
Feng LIN ◽  
...  

Parasitology ◽  
2021 ◽  
Vol 148 (6) ◽  
pp. 712-725
Author(s):  
Arnar K. S. Sandholt ◽  
Feifei Xu ◽  
Robert Söderlund ◽  
Anna Lundén ◽  
Karin Troell ◽  
...  

Abstract


2021 ◽  
Vol 22 (4) ◽  
pp. 2006
Author(s):  
Mi Jin Kim ◽  
Jinhong Park ◽  
Jinho Kim ◽  
Ji-Young Kim ◽  
Mi-Jin An ◽  
...  

Mercury is one of the detrimental toxicants that can be found in the environment and exists naturally in different forms; inorganic and organic. Human exposure to inorganic mercury, such as mercury chloride, occurs through air pollution, absorption of food or water, and personal care products. This study aimed to investigate the effect of HgCl2 on cell viability, cell cycle, apoptotic pathway, and alters of the transcriptome profiles in human non-small cell lung cancer cells, H1299. Our data show that HgCl2 treatment causes inhibition of cell growth via cell cycle arrest at G0/G1- and S-phase. In addition, HgCl2 induces apoptotic cell death through the caspase-3-independent pathway. Comprehensive transcriptome analysis using RNA-seq indicated that cellular nitrogen compound metabolic process, cellular metabolism, and translation for biological processes-related gene sets were significantly up- and downregulated by HgCl2 treatment. Interestingly, comparative gene expression patterns by RNA-seq indicated that mitochondrial ribosomal proteins were markedly altered by low-dose of HgCl2 treatment. Altogether, these data show that HgCl2 induces apoptotic cell death through the dysfunction of mitochondria.


Hereditas ◽  
2009 ◽  
Vol 146 (2) ◽  
pp. 67-73 ◽  
Author(s):  
Yuqiang Liu ◽  
Changchao Su ◽  
Ling Jiang ◽  
Jun He ◽  
Han Wu ◽  
...  

Gene ◽  
2018 ◽  
Vol 645 ◽  
pp. 146-156 ◽  
Author(s):  
Soumyadev Sarkar ◽  
Somnath Chakravorty ◽  
Avishek Mukherjee ◽  
Debanjana Bhattacharya ◽  
Semantee Bhattacharya ◽  
...  

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