Achieving Partial Nitritation in Anammox Start-Up Environment

Removing ammonium via the partial nitritation anammox (PNA) process has been widely applied because of its cost and energy effectiveness. However, the first stage of PNA, partial nitritation, is hard to implement practically due to the challenging suppression of nitrate oxidizing bacteria (NOB) and should be achieved in the anammox environment to extend it to one stage PNA. Hence, this article evaluates different techniques, such as the combination of low dissolve oxygen (DO) and high free ammonia (FA), and the intermittent aeration cycle to achieve partial nitritation in an anammox start-up environment. For this purpose, a 10.5 L lab-scale moving bed biofilm reactor was set up and fed with synthetic wastewater and the transformation of influent ammonium into nitrate and nitrite was measured. The results showed that, despite applying low DO and higher free ammonia than the inhibition range of NOB, the nitrate production rate (NPR) was consistently higher than the nitrite accumulation rate (NAR), signifying no sufficient NOB suppression, partial nitritation under continuous aeration and up to a 0.27 gN/m2.d surface ammonium loading rate (SALR). Higher SALR than 0.27 gN/m2.d could result in partial nitritation since nitrogen compounds transformation was closer to partial nitritation when the reactor was subjected to 0.27 gN/m2.d rather than 0.14 gN/m2.d. Lifting up the SALR, on the other hand, results in a bad anammox environment and cannot prolong it to one-stage PNA. An intermittent aeration cycle with four different cycle lengths sets, obtained by monitoring nitrogen compound transformation, was, therefore, applied to the reactor. The relatively shorter aerobic length of 10 min ON and 30 OFF intermittent aeration cycle with 0.5 mg/L aerated DO was successful in achieving the partial nitritation with NPR, NAR, and ammonium removal efficiency (ARE) values of 17%, 78%, and 37%, respectively, showing that shorter aerated length suppresses NOB to a high degree due to less available time for NOB after oxygen starvation.

Proteomic Analysis of the Periodontal Pathogen Prevotella Intermedia Secretomes in Biofilm and Planktonic Lifestyles

Prevotella intermedia is an important species associated with periodontitis. Despite the remarkable clinical significance, little is known about the molecular basis for its virulence. The aim of this study was to characterize the secretome of P. intermedia in biofilm and planktonic life mode. The biofilm secretome showed 109 proteins while the planktonic secretome showed 136 proteins. The biofilm and the planktonic secretomes contained 17 and 33 signal-peptide bearing proteins, 13 and 18 lipoproteins, respectively. Superoxide reductase, sensor histidine kinase, C40 family peptidase, elongation factor Tu, threonine synthase etc. were unique to biofilm. Of the ~30 proteins with predicted virulence potential from biofilm and planktonic secretomes, only 6 were common between the two groups, implying large differences between biofilm and planktonic modes of P. intermedia. From gene ontology biofilm secretome displayed a markedly higher percent proteins compared to planktonic secretome in terms of cellular amino acid metabolic process, nitrogen compound metabolic process etc. Inflammatory cytokine profile analysis revealed that only the biofilm secretome, not the planktonic one, induced important cytokines such as MIP-1a/MIP-1b, IL-1b, and IL-8. In conclusion, the revealed differences in the protein profiles of P. intermedia biofilm and planktonic secretomes may trigger further questions about molecular mechanisms how this species exerts its virulence potential in the oral cavity.

Comprehensive analysis of the ceRNA network in coronary artery disease

With the rapid aging of the population, coronary artery disease (CAD) has become one of the most fatal chronic diseases. However, the genetic mechanism of CAD is still unclear. The purpose of this study is to construct the lncRNA-miRNA-mRNA regulatory network for CAD diseases and systematically identify differentially expressed genes in patients with coronary heart disease. In this study, two lncRNA datasets (GSE69587 and GSE113079) and a microRNA dataset (GSE105449) which contained 393 and 38 CAD samples were selected. In addition, two mRNA datasets which named GSE113079 (98 CAD samples) and GSE9820 (8 CAD samples) were selected to search the differentially expressed genes (DEGs). By comparing the expression data between CAD and control samples, a total of 1111 lncRNAs, 2595 mRNAs and 22 miRNAs were identified. Based on the DEGs, a lncRNA-miRNA-mRNA ceRNA network was constructed to explore the hub nodes in CAD. In the ceRNA network, the lncRNAs KCNQ1OT1 and H19 showed high connectivity with the nine miRNAs. GO and KEGG results showed that genes in ceRNA networks were mainly involved in nitrogen compound metabolic process, PI3K-Akt signaling pathway and retrograde endocannabinoid signaling. These findings will improve the understanding of the occurrence and development mechanism of CAD.

Comment on “Isotopic evidence for dominant secondary production of HONO in near-ground wildfire plumes” by Chai et al. (2021)

Chai et al. (2021) recently published measurements of wildfire-derived (WF) oxides of nitrogen (NOx) and nitrous acid (HONO) and their isotopic composition. The method used to sample NOx, collection in alkaline solution, has a known 1:1 interference from another reactive nitrogen compound, acetyl peroxynitrate (PAN). Although PAN is thermally unstable, subsequent reactions with nitrogen dioxide (NO2) in effect extend the lifetime of PAN many times longer than the initial decomposition reaction would indicate. This, coupled with the rapid and efficient formation of PAN in WF plumes, means the NOx measurements reported by Chai et al.​​​​​​​ were severely impacted by PAN. In addition, the model reactions in the original paper included neither the reactions of NO2 with hydroxyl radical (OH) to form nitric acid nor the efficient reaction of larger organic radicals with nitric oxide to form organic nitrates (RONO2).

Organic Matter Removal in a Simultaneous Nitrification-Denitrification Process Using Fixed-Film System.

This study focused on evaluating different support media for COD and nitrogen compound removal from an Upflow Anaerobic Sludge Blanket (UASB) reactor fed with swine wastewater. Maximum specific nitrification (MSNA) and denitrification (MSDA) activity tests were performed in two fixed-film systems with (1) polyurethane foam (R1) and (2) polyethylene rings (R2). The results showed that the R2 system performed more efficiently than R1, reaching organic matter removal of 77 ± 8% and nitrogen of 98 ± 4%, attributed to higher specific denitrifying activity recorded (5.3 ± 0.34 g NO3--N/g VTS ∙h). In this sense, MSDA tests indicated that the suspended biomass was responsible for at least 70% of nitrogen removal in the form of ammonium compared with 20% attributed to biomass in the form of biofilm. On the other hand, 40 ± 5% of initial nitrogen could not be quantified in the system effluents, but 10 ± 1% was attributed to loss by volatilization. According to the analyses, the previous information infers the development of simultaneous nitrification-denitrification (SND) routes. Respect to the analyses of microbial diversity and abundance in the biofilm of R2 rings, the presence of the genus Pseudomonas dominated the prokaryotic community of the system in 54.4%.

Comment on “Isotopic evidence for dominant secondary production of HONO in near-ground wildfire plumes.”

Chai et al. recently published measurements of wild fire (WF) derived oxides of nitrogen (NOx) and nitrous acid (HONO) and their isotopic composition. The method used to sample NOx, collection in alkaline solution, has a known 1:1 interference from another reactive nitrogen compound, acetyl peroxynitrate (PAN). Although PAN is thermally unstable, subsequent reactions with nitrogen dioxide (NO2) in effect extend the lifetime of PAN many times longer than the initial decomposition reaction would indicate. This, coupled with the rapid and efficient formation of PAN in WF plumes, means the NOx measurements reported by Chai et al. were severely impacted by PAN. In addition, the model reactions in the original paper did not include the reactions of NO2 with hydroxyl radical (OH) to form nitric acid, nor the efficient reaction of larger organic radicals with nitric oxide to form organic nitrates (RONO2).

Proteomic Analysis Reveals Growth Inhibition of Coriolus versicolor by Methanol Extracts of Cinnamomum camphora Xylem

The extracts of decay-resistant tree species are important research objects for the future development of wood preservatives. To understand the antifungal mechanisms of Coriolus versicolor inhibition with methanol extracts of C. camphora xylem, the protein profiles of C. versicolor were analyzed using 2-DE followed by MALDI-TOF/MS and bioinformatic analyses. The results showed that 41 protein spots were obviously changed among the 366-385 protein spots of C. versicolor treated with methanol extracts of C. camphora xylem. Twenty-one protein spots were upregulated, and 20 protein spots were downregulated. Cellular localization was performed to identify these differential proteins, and biological process and functional analysis found that 9 of these proteins were in the cytoplasm, 6 were intracellular, and 5 were in the mitochondrion. A total of 18.8% were mapped to small-molecule metabolic processes, 12.5% to cellular amino acid metabolic processes, and 10.9% to cellular nitrogen compound metabolic processes. Twenty-five percent of the differential proteins were associated with ion bonding, 15% with oxidoreductase activity, and 15% with ATPase activity and transmembrane transport activity. Downregulated expression of aspartate aminotransferase, ATP synthase alpha chain, DEAD/DEAH-box helicase, and phosphoglycerate kinase showed that the methanol extracts of C. camphora xylem disrupted functional aspects such as nitrogen and carbon metabolism, energy metabolism, hormone signal response, and glucose metabolism, eventually leading to C. versicolor inhibition.