Change in fast Chl a fluorescence transients, 2 dimensional protein profile and pigment protein interactions during state transitions in Arabidopsis thaliana

A major photoprotective mechanism that plants employ against excess light involves interplay between the xanthophyll cycle and the accumulation of protons. Using mutants in the xanthophyll cycle, the roles of violaxanthin, antheraxanthin and zeaxanthin have already been well established. In this paper, we present data on intact leaves of a mutant [coupling factor quick recovery mutant (cfq); atpC1:E244K] of Arabidopsis thaliana that we expected, based on 515-nm absorbance changes (Gabrys et al. 1994, Plant Physiology 104, 769–776), to have differences in light-induced ΔpH. The significance of this paper is: (i) it is the first study of the photoprotective energy dissipation involving a mutant of the pH gradient; it establishes that protons play an important role in the pattern of non-photochemical quenching (NPQ) of chlorophyll (Chl) a fluorescence; and (ii) differences between the cfq and the wild type (wt) are observed only under subsaturating light intensities, and are strongest in the initial few minutes of the induction period. Our results on light-intensity dependent Chl* a fluorescence transients (the Kautsky effect), and on NPQ of Chl a fluorescence, at 50–250 μmol photons m–2 s–1 demonstrate: (i) the ‘P-to-S’ (or ‘T’) decay, known to be related to [H+] (Briantais et al. 1979, Biochimica et Biophysica Acta 548, 128–138), is slowed in the mutant; and (ii) the pattern of NPQ kinetics is different in the initial 100 s — in the wt leaves, there is a marked rise and decline, and in the cfq mutant, there is a slowed rise. These differences are absent at 750 μmol photons m–2 s–1. Pre-illumination and nigericin (an uncoupler that dissipates the proton gradient) treatment of the cfq mutant, which has lower ΔpH relative to wild type, confirm the conclusion that protons play an important role in the quenching of Chl a fluorescence.

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A Poisson-Pareto model of Chl-a fluorescence signals in marine environments

ANZIAM Journal ◽

10.21914/anziamj.v56i0.7528 ◽

2015 ◽

Vol 55 ◽

pp. 373

Author(s):

Stephen Woodcock ◽

Bojana Manojlovic ◽

Mark Baird ◽

Peter Ralph

Keyword(s):

Marine Environments ◽

Chl A ◽

Chl A Fluorescence ◽

Pareto Model

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Stomatal Development in the Context of Epidermal Tissues

Annals of Botany ◽

10.1093/aob/mcab052 ◽

2021 ◽

Author(s):

Keiko U Torii

Keyword(s):

Arabidopsis Thaliana ◽

Molecular Genetic ◽

Cell Lineage ◽

Optimal Growth ◽

Cell Types ◽

State Transitions ◽

Stomatal Development ◽

Water Control ◽

Pavement Cells ◽

The Core

Abstract Background Stomata are adjustable pores on the surface of plant shoots for efficient gas exchange and water control. The presence of stomata is essential for plant growth and survival, and the evolution of stomata is considered as a key developmental innovation of the land plants, allowing colonization on land from aquatic environments some 450 million years ago. In the past two decades, molecular genetic studies using the model plant Arabidopsis thaliana identified key genes and signalling modules that regulate stomatal development: master-regulatory transcription factors that orchestrate cell-state transitions and peptide-receptor signal transduction pathways, which, together, enforce proper patterning of stomata within the epidermis. Studies in diverse plant species, ranging from bryophytes to angiosperm grasses, have begun to unravel the conservation and uniqueness of the core modules in stomatal development. Scope Here, I review the mechanisms of stomatal development in the context of epidermal tissue patterning. First, I introduce the core regulatory mechanisms of stomatal patterning and differentiation in the model species Arabidopsis thaliana. Subsequently, experimental evidence is presented supporting the idea that different cell types within the leaf epidermis, namely stomata, hydathodes pores, pavement cells, and trichomes, either share developmental origins or mutually influence each other’s gene regulatory circuits during development. Emphasis is taken on extrinsic and intrinsic signals regulating the balance between stomata and pavement cells, specifically by controlling the fate of Stomatal-Lineage Ground Cells (SLGCs) to remain within the stomatal-cell lineage or differentiate into pavement cells. Finally, I discuss the influence of inter-tissue-layer communication between the epidermis and underlying mesophyll/vascular tissues on stomatal differentiation. Understanding the dynamic behaviors of stomatal precursor cells and their differentiation in the broader context of tissue and organ development may help design plants tailored for optimal growth and productivity in specific agricultural applications and a changing environment.

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Non-photochemical quenching of chlorophyll a fluorescence: early history and characterization of two xanthophyll-cycle mutants of Chlamydomonas reinhardtii

Functional Plant Biology ◽

10.1071/fp02061 ◽

2002 ◽

Vol 29 (10) ◽

pp. 1141 ◽

Cited By ~ 28

Author(s):

Govindjee ◽

Manfredo J. Seufferheld

Keyword(s):

Chlamydomonas Reinhardtii ◽

Oxygen Evolution ◽

Xanthophyll Cycle ◽

Photochemical Quenching ◽

Chl A ◽

Fluorescence Transient ◽

Chl A Fluorescence ◽

Non Photochemical Quenching

This paper deals first with the early, although incomplete, history of photoinhibition, of 'non-QA-related chlorophyll (Chl) a fluorescence changes', and the xanthophyll cycle that preceded the discovery of the correlation between non-photochemical quenching of Chl a fluorescence (NPQ) and conversion of violaxanthin to zeaxanthin. It includes the crucial observation that the fluorescence intensity quenching, when plants are exposed to excess light, is indeed due to a change in the quantum yield of fluorescence. The history ends with a novel turn in the direction of research — isolation and characterization of NPQ xanthophyll-cycle mutants of Chlamydomonas reinhardtii Dangeard and Arabidopsis thaliana (L.) Heynh., blocked in conversion of violaxanthin to zeaxanthin, and zeaxanthin to violaxanthin, respectively. In the second part of the paper, we extend the characterization of two of these mutants (npq1, which accumulates violaxanthin, and npq2, which accumulates zeaxanthin) through parallel measurements on growth, and several assays of PSII function: oxygen evolution, Chl a fluorescence transient (the Kautsky effect), the two-electron gate function of PSII, the back reactions around PSII, and measurements of NPQ by pulse-amplitude modulation (PAM 2000) fluorimeter. We show that, in the npq2 mutant, Chl a fluorescence is quenched both in the absence and presence of 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). However, no differences are observed in functioning of the electron-acceptor side of PSII — both the two-electron gate and the back reactions are unchanged. In addition, the role of protons in fluorescence quenching during the 'P-to-S' fluorescence transient was confirmed by the effect of nigericin in decreasing this quenching effect. Also, the absence of zeaxanthin in the npq1 mutant leads to reduced oxygen evolution at high light intensity, suggesting another protective role of this carotenoid. The available data not only support the current model of NPQ that includes roles for both pH and the xanthophylls, but also are consistent with additional protective roles of zeaxanthin. However, this paper emphasizes that we still lack sufficient understanding of the different parts of NPQ, and that the precise mechanisms of photoprotection in the alga Chlamydomonas may not be the same as those in higher plants.

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From the shape of the vertical profile of in vivo fluorescence to Chlorophyll-<i>a</i> concentration

Biogeosciences ◽

10.5194/bg-8-2391-2011 ◽

2011 ◽

Vol 8 (8) ◽

pp. 2391-2406 ◽

Cited By ~ 31

Author(s):

A. Mignot ◽

H. Claustre ◽

F. D'Ortenzio ◽

X. Xing ◽

A. Poteau ◽

...

Keyword(s):

Mixed Layer ◽

Mixed Layer Depth ◽

Homogeneous Layer ◽

Fluorescence Signal ◽

Vertical Profiles ◽

Shape Parameters ◽

Chl A ◽

In Vivo Fluorescence ◽

Chl A Fluorescence

Abstract. In vivo fluorescence of Chlorophyll-a (Chl-a) is a potentially useful property to study the vertical distribution of phytoplankton biomass. However the technique is presently not fully exploited as it should be, essentially because of the difficulties in converting the fluorescence signal into an accurate Chl-a concentration. These difficulties arise noticeably from natural variations in the Chl-a fluorescence relationship, which is under the control of community composition as well as of their nutrient and light status. As a consequence, although vertical profiles of fluorescence are likely the most recorded biological property in the open ocean, the corresponding large databases are underexploited. Here with the aim to convert a fluorescence profile into a Chl-a concentration profile, we test the hypothesis that the Chl-a concentration can be gathered from the sole knowledge of the shape of the fluorescence profile. We analyze a large dataset from 18 oceanographic cruises conducted in case-1 waters from the highly stratified hyperoligotrophic waters (surface Chl-a = 0.02 mg m−3) of the South Pacific Gyre to the eutrophic waters of the Benguela upwelling (surface Chl-a = 32 mg m−3) and including the very deep mixed waters in the North Atlantic (Mixed Layer Depth = 690 m). This dataset encompasses more than 700 vertical profiles of Chl-a fluorescence as well as accurate estimations of Chl-a by High Performance Liquid Chromatography (HPLC). Two typical fluorescence profiles are identified, the uniform profile, characterized by a homogeneous layer roughly corresponding to the mixed layer, and the non-uniform profile, characterized by the presence of a Deep Chlorophyll Maximum. Using appropriate mathematical parameterizations, a fluorescence profile is subsequently represented by 3 or 5 shape parameters for uniform or non-uniform profiles, respectively. For both situations, an empirical model is developed to predict the "true" Chl-a concentration from these shape parameters. This model is then used to calibrate a fluorescence profile in Chl-a units. The validation of the approach provides satisfactory results with a median absolute percent deviation of 33 % when comparing the HPLC Chl-a profiles to the Chl-a-calibrated fluorescence. The proposed approach thus opens the possibility to produce Chl-a climatologies from uncalibrated fluorescence profile databases that have been acquired in the past and to which numerous new profiles will be added, thanks to the recent availability of autonomous platforms (profiling floats, gliders and animals) instrumented with miniature fluorometers.

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Identification of sulfenylated cysteines in Arabidopsis thaliana proteins using a disulfide-linked peptide reporter

10.1101/2020.03.25.989145 ◽

2020 ◽

Author(s):

Bo Wei ◽

Patrick Willems ◽

Jingjing Huang ◽

Caiping Tian ◽

Jing Yang ◽

...

Keyword(s):

Arabidopsis Thaliana ◽

Protein Interactions ◽

Affinity Purification ◽

Mass Spectrometry Analysis ◽

Technological Advancement ◽

Amino Acid Residues ◽

Cysteine Oxidation ◽

Spectrometry Analysis ◽

Mixed Disulfide ◽

And Function

ABSTRACTIn proteins, hydrogen peroxide (H2O2) reacts with redox-sensitive cysteines to form cysteine sulfenic acid, also known as S-sulfenylation. These cysteine oxidation events can steer diverse cellular processes by altering protein interactions, trafficking, conformation, and function. Previously, we had identified S-sulfenylated proteins by using a tagged proteinaceous probe based on the yeast AP-1–like (Yap1) transcription factor that specifically reacts with sulfenic acids and traps them through a mixed disulfide bond. However, the identity of the S-sulfenylated amino acid residues remained enigmatic. Here, we present a technological advancement to identify in situ sulfenylated cysteines directly by means of the transgenic Yap1 probe. In Arabidopsis thaliana cells, after an initial affinity purification and a tryptic digestion, we further enriched the mixed disulfide-linked peptides with an antibody targeting the YAP1C-derived peptide (C598SEIWDR) that entails the redox-active cysteine. Subsequent mass spectrometry analysis with pLink 2 identified 1,745 YAP1C cross-linked peptides, indicating sulfenylated cysteines in over 1,000 proteins. Approximately 55% of these YAP1C-linked cysteines had previously been reported as redox-sensitive cysteines (S-sulfenylation, S-nitrosylation, and reversibly oxidized cysteines). The presented methodology provides a noninvasive approach to identify sulfenylated cysteines in any species that can be genetically modified.

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Antimycin A sensitive pathway independent from PGR5 cyclic electron transfer triggers non-photochemical reduction of PQ pool and state transitions in Arabidopsis thaliana

Journal of Photochemistry and Photobiology B Biology ◽

10.1016/j.jphotobiol.2015.02.013 ◽

2015 ◽

Vol 146 ◽

pp. 24-33 ◽

Cited By ~ 4

Author(s):

Sreedhar Nellaepalli ◽

Sireesha Kodru ◽

Agepati S. Raghavendra ◽

Rajagopal Subramanyam

Keyword(s):

Arabidopsis Thaliana ◽

Electron Transfer ◽

State Transitions ◽

Antimycin A ◽

Photochemical Reduction ◽

Cyclic Electron Transfer

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Distinct carbohydrate and lipid-based molecular patterns within lipopolysaccharides from Burkholderia cepacia contribute to defense-associated differential gene expression in Arabidopsis thaliana

Innate Immunity ◽

10.1177/1753425910392609 ◽

2011 ◽

Vol 18 (1) ◽

pp. 140-154 ◽

Cited By ~ 38

Author(s):

Ntakadzeni E Madala ◽

Antonio Molinaro ◽

Ian A Dubery

Keyword(s):

Arabidopsis Thaliana ◽

Protein Interactions ◽

Stress Responses ◽

Burkholderia Cepacia ◽

Lipid A ◽

Metabolic Reprogramming ◽

Basal Resistance ◽

Signal Perception ◽

Initial Perception ◽

Molecular Patterns

Lipopolysaccharides are structural components within the cell walls of Gram-negative bacteria. The LPSs as microbe-associated molecular pattern (MAMP) molecules can trigger defense-related responses involved in MAMP-triggered immunity and basal resistance in plants, presumably from an initial perception event. LPS from Burkholderia cepacia as well as two fragments, the glycolipid, lipid A and the polysaccharide (OPS-core) chain, were used to treat Arabidopsis thaliana seedlings to evaluate the eliciting activities of the individual LPS sub-domains by means of Annealing Control Primer-based Differential Display transcript profiling. Genes found to be up-regulated encode for proteins involved in signal perception and transduction, transcriptional regulation and defense – and stress responses. Furthermore, genes encoding proteins involved in chaperoning, secretion, protein–protein interactions and protein degradation were differentially expressed. It is concluded that intact LPS, as well as the two sub-components, induced the expression of a broad range of genes associated with perception and defense as well as metabolic reprogramming of cellular activities in support of immunity and basal resistance. Whilst the lipid A and OPS moieties were able to up-regulate sub-sets of defense-associated genes over the same spectrum of categories as intact LPS, the up-regulation observed with intact LPS was the more comprehensive, suggesting that the lipid A and glycan molecular patterns of the molecule act as partial agonists, but that the intact LPS structure is required for full agonist activity.

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