The ribosomal intergenic spacer (IGS) in the potato and tobacco cyst nematodes, Globodera pallida, G. rostochiensis and G. tabacum

2019 ◽  
Vol 48 ◽  
pp. 101441 ◽  
Author(s):  
Mehrdad Madani ◽  
Len Ward ◽  
Andy Vierstraete ◽  
Solke H. De Boer ◽  
Maurice Moens
Keyword(s):  
Intergenic Spacer ◽  
Globodera Pallida ◽  
Cyst Nematodes ◽  
Ribosomal Intergenic Spacer

scholarly journals Taxonomy, Morphological and Molecular Identification of the Potato Cyst Nematodes, Globodera pallida and G. rostochiensis

Plants ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 184
Author(s):  
John Wainer ◽  
Quang Dinh
Keyword(s):  
Life Cycle ◽  
Molecular Identification ◽  
Soil Sampling ◽  
Globodera Pallida ◽  
Potato Cyst Nematodes ◽  
Cyst Nematodes ◽  
Primary Focus

The scope of this paper is limited to the taxonomy, detection, and reliable morphological and molecular identification of the potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis. It describes the nomenclature, hosts, life cycle, pathotypes, and symptoms of the two species. It also provides detailed instructions for soil sampling and extraction of cysts from soil. The primary focus of the paper is the presentation of accurate and effective methods to identify the two principal PCN species.

scholarly journals Occurrence and molecular characterization of cyst nematode species (Globodera spp.) associated with potato crops in Colombia

PLoS ONE ◽  
2021 ◽  
Vol 16 (7) ◽  
pp. e0241256
Author(s):  
Daniela Vallejo ◽  
Diego A. Rojas ◽  
John A. Martinez ◽  
Sergio Marchant ◽  
Claudia M. Holguin ◽  
...  
Keyword(s):  
Management Strategies ◽  
Nematode Species ◽  
Globodera Pallida ◽  
Rrna Gene ◽  
Potato Cyst Nematodes ◽  
28S Rrna ◽  
Cyst Nematodes ◽  
Nucleotide Substitutions ◽  
Internal Transcribed Spacer Region ◽  
The Status

Potato cyst nematodes (PCN) from the genus Globodera spp. cause major losses in the potato (Solanum tuberosum) industry worldwide. Despite their importance, at present little is known about the status of this plant pathogen in cultivated potatoes in Colombia. In this study, a total of 589 samples collected from 75 geographic localities in nine potato producing regions of Colombia (Cundinamarca, Boyacá, Antioquia, Nariño, Santander, Norte de Santander, Tolima, Caldas and Cauca) were assayed for the presence of potato cyst nematodes. Fifty-seven percent of samples tested positive for PCN. Based on phylogenetic analysis of the internal transcribed spacer region (ITS1-5.8S-ITS2) of the rRNA gene and D2-D3 expansion segments of the 28S rRNA gene, all populations but one were identified as Globodera pallida. Sequences of G. pallida from Colombia formed a monophyletic group closely related to Peruvian populations, with the lowest average number of nucleotide substitutions per site (Dxy = 0.002) and net nucleotide substitutions per site (Da = 0.001), when compared to G. pallida populations from Europe, South and North America. A single sample formed a well-supported subclade along with G. rostochiensis and G. tabacum from Japan, USA and Argentina. To our knowledge this is the first comprehensive survey of Globodera populations from Colombia that includes genetic data. Our findings on species diversity and phylogenetic relationships of Globodera populations from Colombia may help elucidate the status and distribution of Globodera species, and lead to the development of accurate management strategies for the potato cyst nematodes.

Variation in in vitro hatch of potato cyst nematodes in response to different potato cultivars inoculated with isolates of arbuscular mycorrhizal fungi

Nematology ◽  
2011 ◽  
Vol 13 (6) ◽  
pp. 661-672
Author(s):  
Patrick Haydock ◽  
Peter Jones ◽  
Thomas Deliopoulos
Keyword(s):  
Mycorrhizal Fungi ◽  
Glomus Intraradices ◽  
Arbuscular Mycorrhizal ◽  
Potato Cultivars ◽  
Globodera Pallida ◽  
Cyst Nematodes ◽  
Commercial Mixture ◽  
The Individual ◽  
Shoot Emergence

AbstractSix potato (Solanum tuberosum) cultivars (Home Guard, Bintje, British Queen, Maris Piper, Pentland Dell and Saturna) were inoculated with Vaminoc (a commercial mixture of three selected arbuscular mycorrhizal fungal (AMF) isolates) and with two of the individual AMF isolates present in Vaminoc, Glomus intraradices (BioRize BB-E) and Glomus mosseae (isolate BEG 12). Root length colonisation by AMF at 6 weeks after shoot emergence ranged from 49 to 54%, with Vaminoc exhibiting the highest percentage. In comparison with control plants, AMF-inoculated plants accelerated the in vitro hatch (21% mean increase) of the potato cyst nematode (PCN) species Globodera pallida (but not of G. rostochiensis) in potato root leachate collected 3 weeks after shoot emergence. The effects of mycorrhization on PCN hatch were broadly similar across the six potato cultivars. This consistency supports the potential use of AMF inoculation of potato plants as part of an integrated pest management strategy for G. pallida.

Relationships among Brazilian and worldwide isolates of Fusarium oxysporum f. sp. lactucae race 1 inferred from ribosomal intergenic spacer (IGS-rDNA) region and EF-1α gene sequences

2018 ◽  
Vol 152 (1) ◽  
pp. 81-94 ◽  
Author(s):  
Cléia S. Cabral ◽  
Maria Esther de N. Fonseca ◽  
Kátia R. Brunelli ◽  
Mauricio Rossato ◽  
Hélcio Costa ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Intergenic Spacer ◽  
Gene Sequences ◽  
Ribosomal Intergenic Spacer ◽  
Race 1

scholarly journals Study of European and Czech populations of potato cyst nematodes (Globodera rostochiensis and G. pallida) by RAPD method

2011 ◽  
Vol 50 (No. 2) ◽  
pp. 70-74 ◽  
Author(s):  
P. Sedlák ◽  
M. Melounová ◽  
S. Skupinová ◽  
P. Vejl ◽  
J. Domkářová
Keyword(s):  
Animal Species ◽  
Molecular Genetic ◽  
Globodera Rostochiensis ◽  
Globodera Pallida ◽  
Genetic Identification ◽  
Potato Cyst Nematodes ◽  
Cyst Nematodes ◽  
Genetic Dissimilarity ◽  
Solanaceous Plants ◽  
Molecular Genetic Identification

Potato cyst nematodes (PCN) are the big problem in worldwide planting of potatoes and another Solanaceous plants. Identification of individual pathotypes according to international scheme is very demanding but a very important part of the phytosanitary process to control these pests. Molecular genetic identification of different plant and animal species or individuals is a very interesting way at the present time and let’s hope that it will be important in future. This report presents results of the RAPD study of nine different real PCN populations. There were five Globodera rostochiensis populations and four G. pallida populations. Pathotypes Ro2, Ro2/3, Ro4, Ro5, Pa2 and Pa3 were from European populations; population Ro1 and X were of Czech provenance. Genetics variable of these populations was described by a set of six decameric primers (OPA 07, OPG 03, OPG 05, OPG 08, OPG 10 and OPG 13). Genetic dissimilarity was by Gel Manager for Windows evaluated. Detectable differences behind all populations were found and the dendrogram was compiled. The unknown population X was sorted into group of Globodera pallida species subgroup of Pa2 consequently.

scholarly journals Prokaryotic Dynamics in the Meromictic Coastal Lake Faro (Sicily, Italy)

Diversity ◽  
2019 ◽  
Vol 11 (3) ◽  
pp. 37 ◽  
Author(s):  
Carmela Raffa ◽  
Carmen Rizzo ◽  
Marc Strous ◽  
Emilio De Domenico ◽  
Marilena Sanfilippo ◽  
...  
Keyword(s):  
Intergenic Spacer ◽  
Mixing Conditions ◽  
Coastal Lake ◽  
The North ◽  
Ribosomal Intergenic Spacer ◽  
North Eastern ◽  
Clear Identification ◽  
Catalyzed Reporter Deposition ◽  
Card Fish

Lake Faro, in the North-Eastern corner of Sicily (Italy), shows the typical stratification of a meromictic tempered basin, with a clear identification of the mixolimnion and the monimolimnion, separated by an interfacial chemocline. In this study, an annual-scaled study on the space-time distribution of the microbial communities in water samples of Lake Faro was performed by both ARISA (Amplified Ribosomal Intergenic Spacer Analysis) and CARD-FISH (Catalyzed Reporter Deposition-Fluorescence In Situ Hybridization) approaches. A correlation between microbial parameters and both environmental variables (i.e., temperature, pH, dissolved oxygen, redox potential, salinity, chlorophyll-a) and mixing conditions was highlighted, with an evident seasonal variability. The most significative differences were detected by ARISA between the mixolimnion and the monimolimnion, and between Spring and Autumn, by considering layer and season as a factor, respectively.

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