Analysis of transcriptome profiles of two Pyrus pyrifolia cultivars reveals genes associated with stone cell development

2021 ◽  
Vol 288 ◽  
pp. 110380
Author(s):  
Lixia Sheng ◽  
Jinxin Zhou ◽  
Yinan Ni ◽  
Jianwen Wang
2007 ◽  
Vol 76 (3) ◽  
pp. 191-196 ◽  
Author(s):  
Sang-Hyun Lee ◽  
Jin-Ho Choi ◽  
Wol-Soo Kim ◽  
Yong-Seo Park ◽  
Hiroshi Gemma

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Xin Gong ◽  
Zhihua Xie ◽  
Kaijie Qi ◽  
Liangyi Zhao ◽  
Yazhou Yuan ◽  
...  
Keyword(s):  

Author(s):  
Xi Cheng ◽  
Yongping Cai ◽  
Jinyun Zhang
Keyword(s):  

2020 ◽  
Author(s):  
Han Wang ◽  
Yang Zhang ◽  
Yu Zhao ◽  
Wenlong Han ◽  
Jinjin Lu ◽  
...  

Abstract Background: The β-glucosidase BGLU in the glycoside hydrolase family 1 (GH1) is involved in the sugar metabolism of the plant and plays an important role in maintaining the normal physiological function of the plant. Recent studies had shown that β-glucosidase was involved in plant lignification. The lignification in pear fruit is closely related to the formation of pear stone cells, but the BGLU genes family has not been identified in pears.Result: A total of 343 BGLU genes were identified from five species of Rosaceae (Pyrus bretschneideri, Prunus mume, Malus domestica, Prunus avium, Fragaria vesca). According to phylogenetic analysis, 50 PbBGLUs were divided into 8 groups. 298 syntenic pairs were found in intra- and inter-species collinear analysis of five Rosaceae species, found that pears and apples had more syntenic pairs than pear and the other three Rosaceae species. The Ka/Ks analysis of duplication PbBGLU genes in pear indicated that the main mode of expansion of the PbBGLUs was segmental replication and was mainly affected by purification. qRT-PCR showed that the three gene expression patterns of PbBGLU1, PbBGLU15 and PbBGLU16 were basically consistent with the change trend of pear fruit lignin and stone cell content, and may be involved in lignification and stone cell development of pear fruit. Subcellular localization showed that these three candidate genes were all located on the cell wall.Conclusion: In this study, a genome-wide analysis of BGLU genes in five Rosaceae species was carried out, and three candidate genes related to lignification and stone cell development of pear fruits were identified, which laid the foundation for a deeper understanding of the function of BGLU genes in pear fruits and potential in changing pear fruit quality.


2018 ◽  
Vol 17 (1) ◽  
pp. 103-117 ◽  
Author(s):  
Cheng Xue ◽  
Jia-Long Yao ◽  
Meng-Fan Qin ◽  
Ming-Yue Zhang ◽  
Andrew C. Allan ◽  
...  

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Runze Wang ◽  
Yongsong Xue ◽  
Jing Fan ◽  
Jia-Long Yao ◽  
Mengfan Qin ◽  
...  

Abstract Background Stone cells in fruits of pear (Pyrus pyrifolia) negatively influence fruit quality because their lignified cell walls impart a coarse and granular texture to the fruit flesh. Results We generate RNA-seq data from the developing fruits of 206 pear cultivars with a wide range of stone cell contents and use a systems genetics approach to integrate co-expression networks and expression quantitative trait loci (eQTLs) to characterize the regulatory mechanisms controlling lignocellulose formation in the stone cells of pear fruits. Our data with a total of 35,897 expressed genes and 974,404 SNPs support the identification of seven stone cell formation modules and the detection of 139,515 eQTLs for 3229 genes in these modules. Focusing on regulatory factors and using a co-expression network comprising 39 structural genes, we identify PbrNSC as a candidate regulator of stone cell formation. We then verify the function of PbrNSC in regulating lignocellulose formation using both pear fruit and Arabidopsis plants and further show that PbrNSC can transcriptionally activate multiple target genes involved in secondary cell wall formation. Conclusions This study generates a large resource for studying stone cell formation and provides insights into gene regulatory networks controlling the formation of stone cell and lignocellulose.


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