Evaluating internal versus external characters: Phylogenetic analyses of the Echinoconchidae, Buxtoniinae, and Juresaniinae (phylum Brachiopoda)

2002 ◽  
Vol 76 (4) ◽  
pp. 659-671 ◽  
Author(s):  
Lindsey R. Leighton ◽  
Christopher G. Maples
Keyword(s):  
Nearest Neighbor ◽  
Phylogenetic Signal ◽  
Phylogenetic Analyses ◽  
Shell Shape ◽  
Evolutionary Relationships ◽  
Cardinal Process ◽  
Invertebrate Paleontology ◽  
The Family ◽  
The Subject ◽  
Strong Agreement

Evolutionary relationships between the Echinoconchidae, Productidae, Buxtoniinae, and Juresaniinae (Phylum Brachiopoda, Order Productida) have been the subject of debate for the better part of a century. The original (Muir-Wood and Williams, 1965) and revised (Brunton et al., 2000) Brachiopoda volumes of the Treatise on Invertebrate Paleontology use markedly different classifications and emphasize different characters. The 1965 Treatise classification for these taxa primarily was based on internal features, especially the cardinal process; the revised Treatise (2000) relied on external ornament and shell shape. Multiple phylogenetic analyses (global parsimony, stratocladistics, nearest-neighbor) of 14 genera, representing all of the relevant subfamilies and outgroups, are in strong agreement that 1) the subfamily Buxtoniinae belongs in the family Echinoconchidae, not to the Productidae; 2) the subfamily Juresaniinae is more closely related to the Echinoconchinae than to the Buxtoniinae; and 3) that internal characters, such as a shafted cardinal process and anterio-medial position of the brachial valve adductor field, provide the best phylogenetic signal, and are synapomorphic for the Echinoconchidae. Jackknifing and Bremer Support corroborate these results.

scholarly journals Latrocimicinae completes the phylogeny of Cimicidae: meeting old morphologic data rather than modern host phylogeny

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Sándor Hornok ◽  
Tamara Szentiványi ◽  
Nóra Takács ◽  
Áron Botond Kovács ◽  
Olivier Glaizot ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Evolutionary Relationships ◽  
Bed Bugs ◽  
Relevant Study ◽  
Phylogenetic Methods ◽  
Close Phylogenetic Relationship ◽  
The Family ◽  
Host Phylogeny ◽  
Medical Importance ◽  
Morphologic Data

AbstractThe family Cimicidae includes obligate hematophagous ectoparasites (bed bugs and their relatives) with high veterinary/medical importance. The evolutionary relationships of Cimicidae and their hosts have recently been reported in a phylogenetic context, but in the relevant study, one of the six subfamilies, the bat-specific Latrocimicinae, was not represented. In this study the only known species of Latrocimicinae, i.e., Latrocimex spectans, was analyzed with molecular and phylogenetic methods based on four (two nuclear and two mitochondrial) genetic markers. The completed subfamily-level phylogeny of Cimicidae showed that Latrocimicinae is most closely related to Haematosiphoninae (ectoparasites of birds and humans), with which it shares systematically important morphologic characters, but not hosts. Moreover, in the phylogenetic analyses, cimicid bugs that are known to infest phylogenetically distant bat hosts clustered together (e.g., Leptocimex and Stricticimex within Cacodminae), while cimicid subfamilies (Latrocimicinae, Primicimicinae) that are known to infest bat hosts from closely related superfamilies clustered distantly. In conclusion, adding Latrocimicinae significantly contributed to the resolution of the phylogeny of Cimicidae. The close phylogenetic relationship between Latrocimicinae and Haematosiphoninae is consistent with long-known morphologic data. At the same time, phylogenetic relationships of genera within subfamilies are inconsistent with the phylogeny of relevant hosts. Graphical abstract

Anchialine adjustments: an updated phylogeny and classification for the family Barbouriidae Christoffersen, 1987 (Decapoda: Caridea)

2020 ◽  
Vol 40 (4) ◽  
pp. 401-411 ◽  
Author(s):  
Robert E Ditter ◽  
Luis M Mejía-Ortíz ◽  
Heather D Bracken-Grissom
Keyword(s):  
Phylogenetic Analyses ◽  
Nuclear Gene ◽  
Morphological Characters ◽  
Molecular Data ◽  
Genetic Distances ◽  
Evolutionary Relationships ◽  
The Bahamas ◽  
16S Gene ◽  
Dichotomous Key ◽  
The Family

Abstract Barbouriidae Christoffersen, 1987 is a family comprised of 4 genera and 11 species of enigmatic shrimps restricted to anchialine or marine caves whose evolutionary history and relationships remain elusive. We investigated the evolutionary relationships among members of Barbouriidae with the inclusion of four genera and nine species, and newly collected material from Belize, the Bahamas, and the Yucatán Peninsula, Mexico. Phylogenetic analyses based on seven mitochondrial and nuclear gene regions and genetic distances calculated using partial 16S gene regions have identified a need to revisit the relationships and classification within Barbouriidae. More specifically, we find evidence to suggest Janicea Manning & Hart, 1984 as a junior synonym of Parhippolyte Borradaile, 1900, B. yanezi Mejía, Zarza & López, 2008 as a synonym of Barbouria cubensis (von Martens, 1872), and define two new subfamilies, Calliasmatinae Holthuis, 1973 and Barbouriinae Christoffersen, 1987. Included is a dichotomous key for the species of Barbouriidae that summarizes previous literature and includes new morphological characters. Our findings shed light on existing inaccuracies and gaps in molecular data from barbouriids. We also provide further clarity into evolutionary relationships among genera of Barbouriidae and their allies, suggesting phylogeographic divisions within the family. Our findings suggest an early Atlantic-Pacific divide among genera originating from a shallow-water reef ancestor.

scholarly journals First Phylogeny of Bitterbush Family, Picramniaceae (Picramniales)

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 284
Author(s):  
Alexey Shipunov ◽  
Shyla Carr ◽  
Spencer Furniss ◽  
Kyle Pay ◽  
José Rubens Pirani
Keyword(s):  
Morphological Evolution ◽  
Phylogenetic Analyses ◽  
Nuclear Markers ◽  
Molecular Phylogenetic Tree ◽  
Plant Group ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Recent Addition ◽  
The Subject ◽  
American Tropics

Picramniaceae is the only member of Picramniales which is sister to the clade (Sapindales (Huerteales (Malvales, Brassicales))) in the rosidsmalvids. Not much is known about most aspects of their ecology, geography, and morphology. The family is restricted to American tropics. Picramniaceae representatives are rich in secondary metabolites; some species are known to be important for pharmaceutical purposes. Traditionally, Picramniaceae was classified as a subfamily of Simaroubaceae, but from 1995 on, it has been segregated containing two genera, Picramnia and Alvaradoa, with the recent addition of a third genus, Nothotalisia, described in 2011. Only a few species of the family have been the subject of DNA-related research, and fewer than half of the species have been included in morphological phylogenetic analyses. It is clear that Picramniaceae remains a largely under-researched plant group. Here we present the first molecular phylogenetic tree of the group, based on both chloroplast and nuclear markers, widely adopted in the plant DNA barcoding. The main findings are: The family and its genera are monophyletic and Picramnia is sister to two other genera; some clades corroborate previous assumptions of relationships made on a morphological or geographical basis, while most parts of the molecular topology suggest high levels of homoplasy in the morphological evolution of Picramnia.

scholarly journals Genetic variation and phylogenetic analysis of rabbit haemorrhagic disease virus (RHDV) strains.

2012 ◽  
Vol 59 (4) ◽  
Author(s):  
Beata Hukowska-Szematowicz ◽  
Beata Tokarz-Deptuła ◽  
Wiesław Deptuła
Keyword(s):  
Genetic Variation ◽  
Disease Virus ◽  
Current Knowledge ◽  
Phylogenetic Analyses ◽  
Evolutionary Relationships ◽  
Rabbit Haemorrhagic Disease Virus ◽  
Structural Protein ◽  
Rabbit Haemorrhagic Disease ◽  
The Family ◽  
Haemorrhagic Disease

Rabbit haemorrhagic disease virus (RHDV) belongs to the family Caliciviridae and is the etiological agent of the haemorrhagic disease, also known as rabbit plague. Its genome is a linear single-stranded (ss) RNA of 7437 nucleotides and the capsid is built from a single structural protein VP60. In connection with the discovery of new RHDV strains, there is a constant need to investigate the genetic variation of this virus and perform phylogenetic analyses which may show the evolutionary relationships among the RHDV strains. Studies on the divergence of RHDV have shown that it is genetically quite stable, although recent observations indicate that some new RHDV strains, significantly different from the original RHDV subtype and the new RHDVa subtype, are appearing. These latest findings suggest that a new group of RHDV strains has evolved. The present review summarizes the current knowledge on the genetic variation and the latest achievements in phylogenetic analyses of RHDV strains isolated in various countries.

Evolutionary relationships among life-history traits in Caninae (Mammalia: Carnivora)

2019 ◽  
Author(s):  
Lucas Marafina Vieira Porto ◽  
Renan Maestri ◽  
Leandro Da Silva Duarte
Keyword(s):  
Life History ◽  
Life History Traits ◽  
Phylogenetic Analyses ◽  
Evolutionary Relationships ◽  
Phenotypic Traits ◽  
Complete Understanding ◽  
Ecological Features ◽  
The Family ◽  
Highly Correlated ◽  
Solitary Species

Abstract Over the last few years, a debate about the relative roles of distinct factors on the evolution of lineages has gained prominence. The family Canidae is an excellent group for exploring this idea, owing to its rich fossil history. One of the most intriguing traits in canids is social organization, which varies from highly social to solitary species. However, we do not have a complete understanding of how sociality evolved in this clade. Here, we use a combination of phylogenetic analyses, ancestral character reconstructions and comparative methods on the only extant subfamily, Caninae, to understand how traits expressing ecological features evolved over the last 12.6 Myr. Our findings suggest that the evolution of low, medium and high sociality forms was abrupt and highly correlated with the evolution of hypo-, meso- and hypercarnivorous forms, respectively. In addition, our results suggest that the evolution of phenotypic traits in Caninae occurred through a sequential cause–effect relationship, where changes in habitat use and body size probably triggered changes in social behaviour, which in turn drove the evolution of diet.

scholarly journals Molecular evolutionary relationships of Vietnamese and global pulmonary Paragonimus species in the family paragonimidae and suborder xiphidiata (Platyhelminthes: Trematoda)

2021 ◽  
Vol 18 (4) ◽  
pp. 653-662
Author(s):  
Nguyen Thi Khue ◽  
Pham Thi Khanh Linh ◽  
Do Thi Roan ◽  
Doan Thi Thanh Huong ◽  
Pham Ngoc Doanh ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
The Philippines ◽  
28S Rdna ◽  
Evolutionary Relationships ◽  
Evolutionary Analysis ◽  
North West ◽  
Rdna Sequences ◽  
The Family ◽  
28S Rdna Sequences

Paragonimiasis, caused by Paragonimus species belonging to the family Paragonimidae of the suborder Xiphidiata (Platyhelminthes: Trematoda), often occurs in poor, upland, ethnic minorities, in Vietnam and the world. Asian Paragonimus species are distributed from Japan, South Korea, along with North and Southeast China, North-West and Central Vietnam, the Philippines, Thailand, Bangladesh, India, and Sri Lanka. There are various genetic variants, strains, and genotypes forming different complexes and evolutionary lineages. The 18S, 28S rDNA sequences and the intergenic transcribed spacer regions (ITS-1, ITS-2) of nuclear ribosomal transcription units are commonly used as molecular markers in genetic studies and phylogenetic analyses. We obtained a portion of 28S rDNA (domains D1–D3) of Paragonimus spp. including P. heterotremus (from Vietnam), P. ohirai (Japan), P. iloktsuenensis (Japan), and P. westermani (India and Vietnam) and conducted phylogenetic analysis for molecular evolutionary studies. The results showed that the family Paragonimidae formed the biggest cluster in a phylogenetic tree, which comprises of 46 sequences of 11 species belonging to 11 subgroups, among which the P. westermani complex of strains originating from China, Korea, Japan, India, Philippines, Malaysia, and Vietnam is present. P. westermani complex is arranged in a position of "sister" (sister group) with the subgroup P. siamensis. The P. heterotremus and P. ohirai complexes, and the P. miyazakii, P. harinasutai, P. mexicanus, P. kellicotti, and P. macrorchis complexes are clustered in a common population. P. westermani of Vietnam is in close proximity to the East Asian strains, as of which has been previously reported. P. ohirai and P. iloktsuenensis are considered “sibling” species, sharing the same clade. Phylogenetic analysis using the 28S rDNA sequences directly presented species position and their molecular evolutionary relationships in the families Paragonimidae, Troglotrematidae, Nanophyetidae, and Collyriclidae. Evolutionary analysis has also clarified a number of complex delineation problems and made a clear nomenclature for Paragonimus sp. of Vietnam, in particular, which has scientific grounds merited to recognize as that it is really the P. westermani species.

A new enigmatic genus of subterranean amphipod (Amphipoda : Bogidielloidea) from Terrell County, Texas, with the establishment of Parabogidiellidae, fam. nov., and notes on the family Bogidiellidae

2020 ◽  
Author(s):  
A. G. Cannizzaro ◽  
J. R. Gibson ◽  
T. R. Sawicki
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
Morphological Characters ◽  
Sensu Stricto ◽  
Evolutionary Relationships ◽  
New Genus And Species ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Large Distribution

The superfamily Bogidielloidea is one of the most wide-ranging hypogean amphipod taxa currently known, comprising over 130 species in 43 genera occurring on every continent except Antarctica. This large distribution among such cryptic organisms is curious, especially when combined with weak morphological characters uniting the superfamily. A unique new genus and species of bogidielloid amphipod, Simplexia longicrus, gen. et sp. nov., described from Terrell County, Texas, sheds light on the evolutionary relationships within this grouping. Molecular phylogenetic analyses of the order Amphipoda using two nuclear genes and one mitochondrial gene reveal that this species and the sympatric Parabogidiella americana form a clade removed from other sequenced members of Bogidiellidae sensu stricto, and, as such, the two species are placed in the newly erected Parabogidiellidae, fam. nov. Additional phylogenetic analyses of the cosmopolitan Bogidiellidae are recommended to further resolve its systematics.

Analisis Perbandingan Manajemen Keuangan Ojek Online Dan Ojek Reguler Studi Kasus Kecamatan Duren Sawit Jakarta Timur

Liquidity ◽  
2018 ◽  
Vol 7 (1) ◽  
pp. 41-52
Author(s):  
M. Koesmawan ◽  
Darwin Erhandy ◽  
Dede Dahlan
Keyword(s):  
Financial Management ◽  
Average Income ◽  
Savings And Loans ◽  
Financial Difficulties ◽  
The Family ◽  
Family Finances ◽  
The Subject ◽  
Almost All

In order to meet the needs of living which consists of primary as well as secondary needs, human can work in either a formal or an informal job. One of the informal jobs that is became the subject of this research was to become an ojek driver. Ojek is a ranting motorcycle.  Revenue of ojek drivers, accordingly, should be well managed following the concept of financial management. This research was conducted for the driver of the online motorcycle drivers as well as the regular motorcycle drivers they are called “The Ojek”. Ojek’s location is in Kecamatan (subdistrict) Duren Sawit, East Jakarta with 70 drivers of ojeks. The online ojeks earn an average of Rp 100,000 per day, can save Rp 11,000 to 21,000 per day, while, the regular ojek has an average income per day slightly lower amounted to Rp 78,500, this kind of ojeks generally have other businesses and always record the outflow of theirs money. Both the online and regular ojeks feel a tight competition in getting passengers, but their income can help the family finances and both ojeks want a cooperative especially savings and loans, especially to overcome the urgent financial difficulties. Almost all rivers, do not dare to borrow money. They are afraid of can not refund the money as scheduled.

PENENTUAN DAERAH PRIORITAS PELAYANAN AKTA KELAHIRAN DENGAN METODE K-NN DAN K-MEANS

2020 ◽  
Vol 17 (1) ◽  
pp. 319-328
Author(s):  
Ade Muchlis Maulana Anwar ◽  
Prihastuti Harsani ◽  
Aries Maesya
Keyword(s):  
Nearest Neighbor ◽  
Information Gain ◽  
Birth Certificate ◽  
Population Data ◽  
Community Services ◽  
Birth Certificates ◽  
Similar Data ◽  
K Nearest Neighbor ◽  
Civil Registration ◽  
The Family

Population Data is individual data or aggregate data that is structured as a result of Population Registration and Civil Registration activities. Birth Certificate is a Civil Registration Deed as a result of recording the birth event of a baby whose birth is reported to be registered on the Family Card and given a Population Identification Number (NIK) as a basis for obtaining other community services. From the total number of integrated birth certificate reporting for the 2018 Population Administration Information System (SIAK) totaling 570,637 there were 503,946 reported late and only 66,691 were reported publicly. Clustering is a method used to classify data that is similar to others in one group or similar data to other groups. K-Nearest Neighbor is a method for classifying objects based on learning data that is the closest distance to the test data. k-means is a method used to divide a number of objects into groups based on existing categories by looking at the midpoint. In data mining preprocesses, data is cleaned by filling in the blank data with the most dominating data, and selecting attributes using the information gain method. Based on the k-nearest neighbor method to predict delays in reporting and the k-means method to classify priority areas of service with 10,000 birth certificate data on birth certificates in 2019 that have good enough performance to produce predictions with an accuracy of 74.00% and with K = 2 on k-means produces a index davies bouldin of 1,179.

Dramatis Personae

2018 ◽  
Author(s):  
Susan Mitchell Sommers
Keyword(s):  
Birth Order ◽  
Formal Education ◽  
The Family ◽  
The Subject ◽  
The Voice ◽  
Official Records

This chapter introduces the family: father Edmund, a shoemaker turned bookseller, and his three or four wives, their social and religious status, questions of literacy and formal education. The children are introduced more or less in their birth order: Kezia, Ebenezer, Manoah, Job, and Charity. The difficulties of tracing women is discussed. Particular attention is paid to Kezia, who was the subject of one of Ebenezer’s astrological cases, and Charity, who left a decades-long trail through official records, marking her as one of the most economically savvy members of the family. Since many of the Sibly men took shorthand, there is a brief discussion of contemporary shorthand uses, accuracy, and to what extent shorthand takers preserved the voice of the speaker. Ebenezer’s daughter Urania is also introduced, though like Ebenezer and Manoah, she has her own chapter later in the work

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