scholarly journals First Phylogeny of Bitterbush Family, Picramniaceae (Picramniales)

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 284
Author(s):  
Alexey Shipunov ◽  
Shyla Carr ◽  
Spencer Furniss ◽  
Kyle Pay ◽  
José Rubens Pirani
Keyword(s):  
Morphological Evolution ◽  
Phylogenetic Analyses ◽  
Nuclear Markers ◽  
Molecular Phylogenetic Tree ◽  
Plant Group ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Recent Addition ◽  
The Subject ◽  
American Tropics

Picramniaceae is the only member of Picramniales which is sister to the clade (Sapindales (Huerteales (Malvales, Brassicales))) in the rosidsmalvids. Not much is known about most aspects of their ecology, geography, and morphology. The family is restricted to American tropics. Picramniaceae representatives are rich in secondary metabolites; some species are known to be important for pharmaceutical purposes. Traditionally, Picramniaceae was classified as a subfamily of Simaroubaceae, but from 1995 on, it has been segregated containing two genera, Picramnia and Alvaradoa, with the recent addition of a third genus, Nothotalisia, described in 2011. Only a few species of the family have been the subject of DNA-related research, and fewer than half of the species have been included in morphological phylogenetic analyses. It is clear that Picramniaceae remains a largely under-researched plant group. Here we present the first molecular phylogenetic tree of the group, based on both chloroplast and nuclear markers, widely adopted in the plant DNA barcoding. The main findings are: The family and its genera are monophyletic and Picramnia is sister to two other genera; some clades corroborate previous assumptions of relationships made on a morphological or geographical basis, while most parts of the molecular topology suggest high levels of homoplasy in the morphological evolution of Picramnia.

The Phylogenetic Position of Crenea in the Lythraceae Based on Molecular Evidence, and the Transfer of Its Two Species to Ammannia

2021 ◽  
Vol 106 ◽  
pp. 325-339
Author(s):  
Shirley A. Graham ◽  
Peter W. Inglis ◽  
Taciana B. Cavalcanti
Keyword(s):  
Morphological Character ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Phylogenetic Position ◽  
Molecular Evidence ◽  
Monophyletic Lineage ◽  
The Family ◽  
Mangrove Vegetation ◽  
Molecular Phylogenetic ◽  
Globally Distributed

Crenea Aubl. (Lythraceae) is a ditypic genus of subshrubs occurring in mangrove vegetation on the coasts of northern South America. Phylogenetic analyses based on morphology have offered unresolved and conflicting phylogenetic positions for the genus in the family. This study presents the first molecular sequences for Crenea, from nrITS, rbcL, trnL, trnL-F, and matK regions. Molecular phylogenetic analyses find full support for Crenea within Ammannia L., a relationship not previously recognized. Ammannia is a globally distributed genus of terrestrial to amphibious herbs mostly occurring in freshwater marshes and wetlands. It was recently reconfigured based on phylogenetic evidence to include the genera Nesaea Comm. ex Kunth and Hionanthera A. Fern. & Diniz. The transfer of Crenea to Ammannia further extends the morphological, ecological, and biogeographical diversity of Ammannia and provides the final evidence defining Ammannia as a monophyletic lineage of the Lythraceae. A revised circumscription of Ammannia s.l. adds several new morphological character states and the first species in the genus restricted to mangrove vegetation. Two changes in taxonomic status are made: Ammannia maritima (Aubl.) S. A. Graham, P. W. Inglis, & T. B. Cavalc., comb. nov., and Ammannia patentinervius (Koehne) S. A. Graham, P. W. Inglis, & T. B. Cavalc., comb. nov. The new combinations are described, a list of exsiccatae examined is provided, and the effects of the reconfiguration to the morphology and biogeography of the genus are detailed.

scholarly journals Phylogeny and morphology of genus Nephrocytium (Sphaeropleales, Chlorophyceae, Chlorophyta) from China

Phytotaxa ◽  
2017 ◽  
Vol 319 (1) ◽  
pp. 84 ◽  
Author(s):  
XUDONG LIU ◽  
HUAN ZHU ◽  
BENWEN LIU ◽  
GUOXIANG LIU ◽  
ZHENGYU HU
Keyword(s):  
Phylogenetic Analyses ◽  
Light And Electron Microscopy ◽  
Taxonomic Position ◽  
Phylogenetic Position ◽  
Phytoplankton Communities ◽  
Close Phylogenetic Relationship ◽  
The Family ◽  
Close Relationship ◽  
Molecular Phylogenetic

The genus Nephrocytium Nägeli is a common member of phytoplankton communities that has a distinctive morphology. Its taxonomic position is traditionally considered to be within the family Oocystaceae (Trebouxiophyceae). However, research on its ultrastructure is rare, and the phylogenetic position has not yet been determined. In this study, two strains of Nephrocytium, N. agardhianum Nägeli and N. limneticum (G.M.Smith) G.M.Smith, were identified and successfully cultured in the laboratory. Morphological inspection by light and electron microscopy and molecular phylogenetic analyses were performed to explore the taxonomic position. Ultrastructure implied a likely irregular network of dense and fine ribs on the surface of the daughter cell wall that resembled that of the genus Chromochloris Kol & Chodat (Chromochloridaceae). Phylogenetic analyses revealed that Nephrocytium formed an independent lineage in the order Sphaeropleales (Chlorophyceae) with high support values and a close phylogenetic relationship with Chromochloris. Based on combined morphological, ultrastructural and phylogenetic data, we propose a re-classification of Nephrocytium into Sphaeropleales, sharing a close relationship with Chromochloris.

Across Lydekker's Line - first report of mite harvestmen (Opiliones : Cyphophthalmi : Stylocellidae) from New Guinea

2007 ◽  
Vol 21 (3) ◽  
pp. 207 ◽  
Author(s):  
Ronald M. Clouse ◽  
Gonzalo Giribet
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Guinea ◽  
Single Male ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Family ◽  
Biogeographic Region ◽  
Molecular Phylogenetic ◽  
History Of

Opiliones (harvestmen) in the suborder Cyphophthalmi are not known to disperse across oceans and each family in the suborder is restricted to a clear biogeographic region. While undertaking a revisionary study of the South-east Asian family Stylocellidae, two collections of stylocellids from New Guinea were noted. This was a surprising find, since the island appears never to have had a land connection with Eurasia, where the rest of the family members are found. Here, 21 New Guinean specimens collected from the westernmost end of the island (Manokwari Province, Indonesia) are described and their relationships to other cyphophthalmids are analysed using molecular sequence data. The specimens represent three species, Stylocellus lydekkeri, sp. nov., S. novaguinea, sp. nov. and undescribed females of a probable third species, which are described and illustrated using scanning electron microscope and stereomicroscope photographs. Stylocellus novaguinea, sp. nov. is described from a single male and it was collected with a juvenile and the three females of the apparent third species. Molecular phylogenetic analyses indicate that the new species are indeed in the family Stylocellidae and they therefore reached western New Guinea by dispersing through Lydekker’s line – the easternmost limit of poor dispersers from Eurasia. The New Guinean species may indicate at least two episodes of oceanic dispersal by Cyphophthalmi, a phenomenon here described for the first time. Alternatively, the presence in New Guinea of poor dispersers from Eurasia may suggest novel hypotheses about the history of the island.

scholarly journals Tamilnaduibacter salinus gen. nov., sp. nov., a halotolerant gammaproteobacterium within the family Alteromonadaceae, isolated from a salt pan in Tamilnadu, India

2015 ◽  
Vol 65 (Pt_10) ◽  
pp. 3248-3255 ◽  
Author(s):  
Ashish Verma ◽  
Poonam Mual ◽  
Shanmugam Mayilraj ◽  
Srinivasan Krishnamurthi
Keyword(s):  
Type Strain ◽  
Sequence Similarity ◽  
Phylogenetic Analyses ◽  
Carbon Sources ◽  
Rrna Gene ◽  
The Novel ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Salt Pan ◽  
Slow Growing

Two novel Gram-stain-negative, slow-growing, halotolerant strains with rod-shaped cells, designated as strains Mi-7T and Mi-8, which formed pin-point colonies on halophilic media were isolated during a study into the microbial diversity of a salt pan in the state of Tamilnadu, India. Both the strains had an obligate requirement for 1 % (w/v) NaCl for growth and were halotolerant, growing at NaCl concentrations of up to 20 % (w/v) in media. The strains, however, showed an inability to utilize the majority of substrates tested as sole carbon sources for growth and in fermentation reactions. Molecular phylogenetic analyses, based on 16S rRNA gene sequence revealed their closest phylogenetic neighbours to be members of the genus Marinobacter, with whom they showed the highest sequence similarity of 93.6 % and even less with the type strain of the type species, Marinobacter hydrocarbonoclasticus DSM 8798T (91.1 %). Similarities with other genera within the family Alteromonadaceae were below 91.0 %. However, the two strains were very closely related to each other with 99.9 % sequence similarity, and DNA–DNA hybridization analyses confirmed their placement in the same species. The DNA G+C content of both strains was 65 mol%. Using the polyphasic taxonomic data obtained from this study, strains Mi-7T and Mi-8 represent two strains of the same species of a novel genus for which the name Tamilnaduibacter salinus gen. nov., sp. nov., is proposed; the type strain of the novel species is Mi-7T ( = MTCC 12009T = DSM 28688T).

A tale of two genera: the revival of Hoplodoris (Nudibranchia: Discodorididae) with the description of new species of Hoplodoris and Asteronotus

Zootaxa ◽  
2020 ◽  
Vol 4890 (1) ◽  
pp. 1-37
Author(s):  
SAMANTHA A. DONOHOO ◽  
TERRENCE M. GOSLINER
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Marine Ecosystem ◽  
Undescribed Species ◽  
The Family ◽  
The World ◽  
Molecular Phylogenetic ◽  
Taxonomic Changes ◽  
Distinct Separation ◽  
The Western Pacific

Nudibranchs in the family Discodorididae are generally medium (~30mm) to large (> 50mm) in size, sometimes cryptic, and are found in almost every marine ecosystem around the world. The diversity and systematics of the genera within Discodorididae are poorly understood and have led to numerous taxonomic changes. Hoplodoris Bergh, 1880 has recently been considered a synonym of Asteronotus Ehrenberg, 1831; however, morphological and molecular phylogenetic analyses reveal a distinct separation between these two genera. Here we provide a re-description of the type species Hoplodoris desmoparypha as well as descriptions of four undescribed species of Asteronotus and Hoplodoris. Bayesian inference and maximum likelihood analyses of two mitochondrial and two nuclear genes were used to evaluate the phylogenetic positions of the new species and clarify the relationships between Asteronotus and Hoplodoris to the rest of the Discodorididae. Based on our results, Hoplodoris is removed from synonymy with Asteronotus. Descriptions for Asteronotus markaensis sp. nov., and Asteronotus namuro sp. nov. from the Red Sea, as well as Hoplodoris balbon sp. nov. and Hoplodoris rosans sp. nov. from the western Pacific are provided. 

Evaluating internal versus external characters: Phylogenetic analyses of the Echinoconchidae, Buxtoniinae, and Juresaniinae (phylum Brachiopoda)

2002 ◽  
Vol 76 (4) ◽  
pp. 659-671 ◽  
Author(s):  
Lindsey R. Leighton ◽  
Christopher G. Maples
Keyword(s):  
Nearest Neighbor ◽  
Phylogenetic Signal ◽  
Phylogenetic Analyses ◽  
Shell Shape ◽  
Evolutionary Relationships ◽  
Cardinal Process ◽  
Invertebrate Paleontology ◽  
The Family ◽  
The Subject ◽  
Strong Agreement

Evolutionary relationships between the Echinoconchidae, Productidae, Buxtoniinae, and Juresaniinae (Phylum Brachiopoda, Order Productida) have been the subject of debate for the better part of a century. The original (Muir-Wood and Williams, 1965) and revised (Brunton et al., 2000) Brachiopoda volumes of the Treatise on Invertebrate Paleontology use markedly different classifications and emphasize different characters. The 1965 Treatise classification for these taxa primarily was based on internal features, especially the cardinal process; the revised Treatise (2000) relied on external ornament and shell shape. Multiple phylogenetic analyses (global parsimony, stratocladistics, nearest-neighbor) of 14 genera, representing all of the relevant subfamilies and outgroups, are in strong agreement that 1) the subfamily Buxtoniinae belongs in the family Echinoconchidae, not to the Productidae; 2) the subfamily Juresaniinae is more closely related to the Echinoconchinae than to the Buxtoniinae; and 3) that internal characters, such as a shafted cardinal process and anterio-medial position of the brachial valve adductor field, provide the best phylogenetic signal, and are synapomorphic for the Echinoconchidae. Jackknifing and Bremer Support corroborate these results.

The formerly enigmatic Unidentiidae in the limelight again: a new species of the genus Unidentia from Thailand (Gastropoda: Nudibranchia)

Zootaxa ◽  
2019 ◽  
Vol 4551 (5) ◽  
pp. 556 ◽  
Author(s):  
TATIANA KORSHUNOVA ◽  
RAHUL MEHROTRA ◽  
SPENCER ARNOLD ◽  
KENNET LUNDIN ◽  
BERNARD PICTON ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Morphological Data ◽  
Sea Slugs ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Morphological Differences ◽  
First Time ◽  
A New Species

An integrative molecular and morphological study is presented for the family Unidentiidae. Molecular phylogenetic analyses were conducted with the inclusion of all previous and newly obtained molecular data for the family Unidentiidae Millen & Hermosillo 2012. A new species of the genus Unidentia Millen & Hermosillo 2012, U. aliciae sp. nov., is described from Thailand as part of an inventory of sea slugs at Koh Tao. All up-to-date available morphological data for the species of the genus Unidentia is for the first time summarized. Morphological differences among the different species of Unidentia are clarified showing that every species has its own distinguishable morphological traits. According to the new molecular and morphological data, the family Unidentiidae is re-confirmed as a well-supported taxon of the aeolidacean nudibranchs. The taxonomy and phylogeny of the Aeolidacea in the light of the family Unidentiidae is briefly discussed and necessity of a fine-scale and narrowly-defined taxa approach instead of a ‘‘superlumping’’ one is highlighted. 

scholarly journals Reassessment and systematic position of the sinistral snails of genus Hemiplecta from Thailand (Eupulmonata: Ariophantidae), with description of two new species

2020 ◽  
pp. 1-33
Author(s):  
Chirasak Sutcharit ◽  
Ekgachai Jeratthitikul ◽  
Piyoros Tongkerd ◽  
Somsak Panha
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Comparative Morphology ◽  
Systematic Position ◽  
Reproductive Organ ◽  
Peninsular Malaysia ◽  
Land Snails ◽  
The Family ◽  
Two New Species ◽  
Molecular Phylogenetic

Indochina land snails of the family Ariophantidae are in need of thorough systematic revision. Here we comprehensively revise the systematics of the large-shelled, sinistral (counterclockwise) coiling snails from Thailand and Peninsular Malaysia. Molecular phylogeny based on mitochondrial (coi and 16S) and nuclear (28S) gene sequences demonstrates that these sinistral snails are not members of Dyakiidae as previously thought, but instead are more closely related to the genus Hemiplecta in the family Ariophantidae. Comparative morphology also reveals similarity of reproductive organ features (globular gametolytic organ, well-developed dart apparatus, and lack of amatorial organ complex). Based on this evidence, we propose to transfer these sinistral snails to the genus Hemiplecta. Molecular phylogenetic analyses further strongly support the monophyly of this sinistral lineage with respect to other members of Hemiplecta. This monophyletic clade consists of five members including three species that were previously classified as “Dyakia”, H. lahatensis, H. retrorsa and H. salangana, and two new species described herein, H. ligorica n. sp. and H. thailandica n. sp. This study also suggests that the anatomy of the gametolytic organ in the genus Hemiplecta corresponds well with the phylogenetic relationships and appears to be a taxonomically informative character, while the penial verge has little utility for generic recognition.

scholarly journals Stolonifera from shallow waters in the north-western Pacific: a description of a new genus and two new species within the Arulidae (Anthozoa, Octocorallia)

ZooKeys ◽  
2018 ◽  
Vol 790 ◽  
pp. 1-19 ◽  
Author(s):  
Yee Wah Lau ◽  
Frank Robert Stokvis ◽  
Leendert Pieter van Ofwegen ◽  
James Davis Reimer
Keyword(s):  
New Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Shallow Waters ◽  
The North ◽  
The Family ◽  
Two New Species ◽  
Molecular Phylogenetic ◽  
Dongsha Atoll ◽  
North Western

A new genus and two new species of stoloniferous octocorals (Alcyonacea) within the family Arulidae are described based on specimens collected from Okinawa (Japan), Palau and Dongsha Atoll (Taiwan).Hanagen. n. is erected within Arulidae.Hanahanagasasp. n.is characterised by large spindle-like table-radiates andHanahanatabasp. n.is characterised by having ornamented rods. The distinction of these new taxa is also supported by molecular phylogenetic analyses. The support values resulting from maximum likelihood and Bayesian inference analyses for the genusHanaand new speciesH.hanagasaandH.hanatabaare 82/1.0, 97/1.0 and 61/0.98, respectively.Hanahanagasasp. n.andHanahanatabasp. n.are the first arulid records for Okinawa, Palau, and Dongsha Atoll, and represent species of the second genus within the family Arulidae.

scholarly journals Mammomonogamus nematodes in felid carnivores: a minireview and the first molecular characterization

Parasitology ◽  
2018 ◽  
Vol 145 (14) ◽  
pp. 1959-1968 ◽  
Author(s):  
Barbora Červená ◽  
Kristýna Hrazdilová ◽  
Peter Vallo ◽  
Jennifer Ketzis ◽  
Pompei Bolfa ◽  
...  
Keyword(s):  
Life Cycle ◽  
Dna Markers ◽  
Phylogenetic Analyses ◽  
Geographic Origin ◽  
Review Of The Literature ◽  
Domestic Cats ◽  
Nuclear Markers ◽  
The Family ◽  
Wild Felids ◽  
Mitochondrial And Nuclear Markers

AbstractFive of the 13 known species of Mammomonogamus have been described in members of the family Felidae, including domestic cats, making felids the most frequent hosts of Mammomonogamus. The occurrence of Mammomonogamus in felids is geographically scattered and information on the life cycle and other aspects of infections is lacking. The paucity of data opens the questions on possible conspecificity of some of the described species of Mammomonogamus and on the existence of possible reservoirs for infections in domestic cats in geographically isolated endemic foci of infection. To test such hypotheses, we compared sequences of mitochondrial and nuclear markers obtained from Mammomonogamus adults or eggs collected from domestic cats in three geographically distant localities. Based on morphology, geographic origin and site of infection, the worms examined can be referred to as Mammomonogamus ierei and Mammomonogamus auris. Phylogenetic analyses of both mitochondrial and ribosomal DNA markers showed monophyly of the genus Mammomonogamus and suggested the existence of at least two species in cats. Review of the literature, the existence of several species and the discontinuous geographic distribution of Mammomonogamus infections in domestic cats suggest an historical spillover of infection from wild reservoirs, presumably wild felids.

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