Species delimitation in the Lepraria isidiata-L. santosii group: a population study in the Mediterranean-Macaronesian region

2009 ◽  
Vol 41 (1) ◽  
pp. 1-15 ◽  
Author(s):  
Mauro Tretiach ◽  
Lucia Muggia ◽  
Laurence Baruffo
Keyword(s):  
Phylogenetic Analysis ◽  
Genetic Variability ◽  
Species Delimitation ◽  
Carbonate Rocks ◽  
Morphological Study ◽  
Species Level ◽  
Siliceous Rocks ◽  
Group A ◽  
The Mediterranean ◽  
Mineral Soils

AbstractA thorough chemical, molecular and morphological study has been carried out on a problematic group in the genus Lepraria characterized by lobed, granular thalli with a raised rim and a preference for mosses, rocks and mineral soils in exposed, xeric habitats. The material examined was collected in seven countries of the Mediterranean-Macaronesian region, from chalk, carbonate rocks and derived soils (A-thalli), and from siliceous rocks and derived soils (B-thalli). The results of a phylogenetic analysis based on 93 ITS sequences (29 of which newly obtained) support the identification and the segregation of two taxa at species level, provisionally identified as Lepraria isidiata s. lat., (most of the A-thalli), and L. santosii s. lat. (B-thalli plus the remaining A-thalli), as the observed genetic variability is quite high. Three chemotypes were detected in L. isidiata s. lat., and seven in L. santosii s. lat. The two taxa are morphologically well characterized: in L. isidiata s. lat. the thallus is thicker and the propagules larger than in L. santosii s. lat. The first stages of thallus development from single propagules are described in both species. Some critical remarks are made about the increasing use of the species rank for taxa of Lepraria, which are morphologically and genetically scarcely characterized.

Adding stars to the Chromodoris (Nudibranchia, Chromodorididae) galaxy with the description of four new species

Zootaxa ◽  
2020 ◽  
Vol 4819 (3) ◽  
pp. 401-435
Author(s):  
LYNN J. BONOMO ◽  
TERRENCE M. GOSLINER
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Delimitation ◽  
Distinct Species ◽  
Species Level ◽  
Molecular Phylogenetic Analysis ◽  
Color Patterns ◽  
Species Relationships ◽  
Molecular Phylogenetic ◽  
Pacific Species

This paper describes four new Chromodoris species: Chromodoris balat sp. nov., Chromodoris baqe sp. nov., Chromodoris kalawakan sp. nov., and Chromodoris quagga sp. nov. We were able to distinguish 44 species level lineages within Chromodoris, expanding the Indo-Pacific species from 39 species. The phylogeny presented here provides slightly greater resolution of species relationships than do previous studies of this genus. Layton et al. (2018), determined that variable color patterns made it difficult to differentiate in living specimens of distinct species, but we provide some additional stable color characters that potentially help resolve this issue, as well as additional internal features that are useful in species delimitation and correlate with the molecular phylogenetic analysis.

Revision of the crassipes and pictipes species groups of Apiomerus Hahn (Hemiptera: Reduviidae: Harpactorinae)

Zootaxa ◽  
2011 ◽  
Vol 2949 (1) ◽  
pp. 1 ◽  
Author(s):  
LILY BERNIKER ◽  
SIGURD SZERLIP ◽  
DIMITRI FORERO ◽  
CHRISTIANE WEIRAUCH
Keyword(s):  
Species Identification ◽  
Species Delimitation ◽  
Species Group ◽  
Species Level ◽  
Diagnostic Features ◽  
Group A ◽  
Species Groups ◽  
Males And Females ◽  
Additional Member

Within the genus Apiomerus Hahn, 1831, the crassipes and the pictipes species groups are described. In the crassipes species group, three species are redescribed: Apiomerus crassipes (Fabricius, 1803), Apiomerus rufipennis (Fallou, 1889) and Apiomerus spissipes (Say, 1825); one subspecies is raised to species level and redescribed: Apiomerus cooremani Costa Lima, Campos Seabra & Hathaway, 1951; and six species are described as new: Apiomerus californicus Berniker & Szerlip, sp. nov., Apiomerus cazieri Berniker & Szerlip, sp. nov., Apiomerus floridensis Berniker & Szerlip, sp. nov., Apiomerus montanus Berniker & Szerlip, sp. nov., Apiomerus peninsularis Berniker & Szerlip, sp. nov. and Apiomerus wygodzinskyi Berniker & Szerlip, sp. nov. In the pictipes species group, two species are redescribed, Apiomerus flaviventris Herrich-Schaeffer, 1846 and Apiomerus pictipes Herrich-Schaeffer, 1846, and one subspecies, Apiomerus pictipes pittieri Costa Lima, Campos Seabra, & Hathaway, 1951 is synonymized with Apiomerus pictipes. Neotypes are designated for Apiomerus flaviventris, Apiomerus pictipes, and Apiomerus spissipes. Lectotypes are designated for Apiomerus cooremani and Apiomerus crassipes. The composition of the species groups are different from those originally proposed by Sigurd Szerlip in his PhD dissertation. The crassipes group has one additional member, Apiomerus rufipennis. Furthermore, Apiomerus barrocoloradoi Forero, Berniker & Szerlip, 2010 and the two manuscript names “Apiomerus panther” and “Apiomerus tigris” were removed from the pictipes group. A key to the species is provided, as well as photographs of habitus and diagnostic features for both males and females. Intraspecific polychromatism is discussed as it relates to species identification and species delimitation.

scholarly journals Neelipleona and Symphypleona (Collembola) from a Sampling in the Mesovoid Shallow Substratum of the Sierra de Guadarrama National Park (Madrid and Segovia, Spain): Taxonomy and Biogeography

Insects ◽  
2021 ◽  
Vol 12 (3) ◽  
pp. 266
Author(s):  
Enrique Baquero ◽  
Rafael Jordana ◽  
Vicente M. Ortuño
Keyword(s):  
National Park ◽  
Ecological Niche ◽  
Mediterranean Area ◽  
Abundant Species ◽  
Species Level ◽  
Surface Sampling ◽  
Mesovoid Shallow Substratum ◽  
The Mediterranean

Megalothorax minimus (Neelidae) and Sphaeridia pumilis (Sminthurididae) had already been identified in surface sampling from Sierra de Guadarrama. In Europe, Sminthurinus gisini (Katiannidae) seems to be associated with environments at specific altitudes, and has little representation in this sampling. Pygmarrhopalites custodum Baquero and Jordana sp. nov. (Arrhopalitidae) coexists with two previously identified surface occurring species of the same family (P. elegans and Arrhopalites caecus). However, P. custodum is more abundant, indicating that it occupies an ecological niche tending to troglophile in the mesovoid shallow substratum (MSS). Moreover, it is also more abundant in the MSS of higher altitude corresponding to the bioclimatic zones cryo-oro-Mediterranean and oro-Mediterranean supra forest. Allacma cryptica Baquero and Jordana sp. nov. (Sminthuridae), is another species that had not been previously detected on the surface in the study area. A. cryptica is an addition to a genus which has eight described species. Gisinurus malatestai (Sminthuridae) appears well represented in the MSS, being a species present very occasionally in the Mediterranean area. Two species of the genera Sminthurides (Sminthurididae) and Fasciosminthurus (Bourletiellidae) have been found, but they could not have been identified to the species level. Finally, a few specimens of Dicyrtomina minuta (Dicyrtomidae), an abundant species on the surface, have been captured.

Phylogeny accurately predicts behaviour in Indian Ocean Clitaetra spiders (Araneae:Nephilidae)

2009 ◽  
Vol 23 (3) ◽  
pp. 193 ◽  
Author(s):  
Matjaž Kuntner ◽  
Ingi Agnarsson
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
Indian Ocean ◽  
Species Level ◽  
Web Architecture ◽  
Evolutionarily Conserved ◽  
The Family ◽  
Behavioural Biology

Phylogenies are underutilised, powerful predictors of traits in unstudied species. We tested phylogenetic predictions of web-related behaviour in Clitaetra Simon, 1889, an Afro-Indian spider genus of the family Nephilidae. Clitaetra is phylogenetically sister to all other nephilids and thus important for understanding ancestral traits. Behavioural information on Clitaetra has been limited to only C. irenae Kuntner, 2006 from South Africa which constructs ladder webs. A resolved species-level phylogeny unambiguously optimised Clitaetra behavioural biology and predicted web traits in five unstudied species and a uniform intrageneric nephilid web biology. We tested these predictions by studying the ecology and web biology of C. perroti Simon, 1894 on Madagascar and C. episinoides Simon, 1889 on Mayotte. We confirm predicted arboricolous web architecture in these species. The expected ontogenetic allometric transition from orbs in juveniles to elongate ladder webs in adults was statistically significant in C. perroti, whereas marginally not significant in C. episinoides. We demonstrate the persistence of the temporary spiral in finished Clitaetra webs. A morphological and behavioural phylogenetic analysis resulted in unchanged topology and persisting unambiguous behavioural synapomorphies. Our results support the homology of Clitaetra hub reinforcement with the nephilid hub-cup. In Clitaetra, behaviour was highly predictable and remained consistent with new observations. Our results confirm that nephilid web biology is evolutionarily conserved within genera.

Species delimitation of colour polymorphic Cladophorus (Coleoptera: Lycidae) from New Guinea

Zootaxa ◽  
2017 ◽  
Vol 4320 (3) ◽  
pp. 505 ◽  
Author(s):  
ROMANA KALOUSOVA ◽  
LADISLAV BOCAK
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Related Species ◽  
Species Delimitation ◽  
Morphological Differentiation ◽  
Morphological Characters ◽  
Molecular Data ◽  
Closely Related Species ◽  
Dna Fragment ◽  
Colour Patterns

Cladophorus Guérin-Méneville, 1830 are endemic Papuan net-winged beetles which take part in highly diverse Müllerian mimicry rings. Available specimens were sequenced for cox1–tRNA-Leu–cox2 mitochondrial DNA fragment and the species delimitations were based on the genetic distance, phylogenetic analysis, and morphology. Three earlier described species were identified in the recently collected material and further 10 species are described: C. pallescens sp. nov., C. bicolor sp. nov., C. craterensis sp. nov., C. motykai sp. nov., C. mindikensis sp. nov., C. kailakiensis sp. nov., C. manokwarensis sp. nov., C. haiaensis sp. nov., C. humeralis sp. nov., and C. boceki sp. nov. DNA-based identifications provided some ambiguous results and closely related species could not be robustly delimited using solely molecular data. Additionally, the species limits were based on clearly defined morphological characters and the morphological differentiation was found unlinked from the genetic divergence. Colour patterns cannot be used for identification because all species available in more specimens were polymorphic and followed various local co-mimics. The Papuan fauna of Cladophorus is very diverse and the closely related species regularly occur in limited regions. Differentiation within restricted ranges is therefore considered as the main speciation mode. 

A new species of Scrophularia (Scrophulariaceae) from Hubei, China

Phytotaxa ◽  
2018 ◽  
Vol 350 (1) ◽  
pp. 1
Author(s):  
RUI-HONG WANG ◽  
MAO-QIN XIA ◽  
JIN-BO TAN ◽  
CHUAN CHEN ◽  
XIN-JIE JIN ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Delimitation ◽  
Morphological Characters ◽  
Central China ◽  
Molecular Phylogenetic Analysis ◽  
Leaf Margin ◽  
Close Relationship ◽  
Molecular Phylogenetic ◽  
A New Species

A new species, Scrophularia jinii (Scrophulariaceae), from Central China is described and illustrated. This new species was formerly misidentified as S. fargesii, from which it differs in many morphological characters. Moreover, it is distinct with all known Scrophularia species in its unique deeply double serrate leaf margin with 3–7 big teeth on each side. Molecular phylogenetic analysis further supports its species delimitation and suggests a close relationship with several Japanese and North American species.

Species delimitation in the leaf beetle genus Macroplea (Coleoptera, Chrysomelidae) based on mitochondrial DNA, and phylogeographic considerations

2006 ◽  
Vol 37 (4) ◽  
pp. 467-479 ◽  
Author(s):  
Gregor Kölsch ◽  
Bo Vest Pedersen ◽  
Olof Biström
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Species Delimitation ◽  
Mitochondrial Gene ◽  
Leaf Beetle ◽  
Genetic Distances ◽  
Amino Acid Substitutions ◽  
Species Status ◽  
Leaf Beetles ◽  
Gene Coding

AbstractThe genus Macroplea Samouelle, 1819 is a group of highly specialized aquatic leaf beetles occurring in the Palaearctic. Since the members of this genus are morphologically very similar, we addressed the question of species identification and delimitation by analysing the second half of the mitochondrial gene coding for the cytochrome oxidase I (COI) subunit. Species limits are inferred from the multimodal frequency distribution of genetic distances between specimens: low genetic distances within a species are clearly set apart from distances between species. The species status of the hitherto controversial species M. japana (Jacoby, 1885) is confirmed. The pattern of nucleotide and amino acid substitutions is discussed in the light of functional domains of the COI molecule. Although the data are preliminary, the results provide new data on the distribution of the species. Together with the phylogenetic analysis they allow for a discussion of the phylogeography of the genus.

scholarly journals The challenges and potential utility of phenotypic specimen-level phylogeny based on maximum parsimony

2018 ◽  
Vol 109 (1-2) ◽  
pp. 301-323 ◽  
Author(s):  
Emanuel TSCHOPP ◽  
Paul UPCHURCH
Keyword(s):  
Phylogenetic Analysis ◽  
Maximum Parsimony ◽  
Large Scale ◽  
Intraspecific Variability ◽  
Species Level ◽  
A Posteriori ◽  
Operational Taxonomic Units ◽  
Vertebrate Palaeontology ◽  
Tree Topologies ◽  
Parsimony Criterion

ABSTRACTSpecimen-level phylogenetic approaches are widely used in molecular biology for taxonomic and systematic purposes. However, they have been largely ignored in analyses based on morphological traits, where phylogeneticists mostly resort to species-level analyses. Recently, a number of specimen-level studies have been published in vertebrate palaeontology. These studies indicate that specimen-level phylogeny may be a very useful tool for systematic reassessments at low taxonomic levels. Herein, we review the challenges when working with individual organisms as operational taxonomic units in a palaeontological context, and propose guidelines of how best to perform a specimen-level phylogenetic analysis using the maximum parsimony criterion. Given that no single methodology appears to be perfectly suited to resolve relationships among individuals, and that different taxa probably require different approaches to assess their systematics, we advocate the use of a number of methodologies. In particular, we recommend the inclusion of as many specimens and characters as feasible, and the analysis of relationships using an extended implied weighting approach with different downweighting functions. Resulting polytomies should be explored using a posteriori pruning of unstable specimens, and conflicting tree topologies between different iterations of the analysis should be evaluated by a combination of support values such as jackknifing and symmetric resampling. Species delimitation should be consistent among the ingroup and based on a reproducible approach. Although time-consuming and methodologically challenging, specimen-level phylogenetic analysis is a highly useful tool to assess intraspecific variability and provide the basis for a more informed and accurate creation of species-level operational taxonomic units in large-scale systematic studies. It also has the potential to inform us about past speciation processes, morphological trait evolution, and their potential intrinsic and extrinsic drivers in pre-eminent detail.

scholarly journals First records of the North American leafhopper Gyponana mail (Hemiptera: Cicadellidae) invading urban gardens and agroecosystems in Europe

2021 ◽  
pp. 213-219
Author(s):  
Valeria Trivellone ◽  
Vally Forte ◽  
Luisa Filippin ◽  
Christopher H. Dietrich
Keyword(s):  
Phylogenetic Analysis ◽  
Host Plant ◽  
North American ◽  
Male Genitalia ◽  
Morphological Study ◽  
European Population ◽  
Northern Italy ◽  
Urban Gardens ◽  
The North ◽  
Palearctic Region

The Nearctic leafhopper species Gyponana (Gyponana) mali DeLong, 1942 is reported from Europe for the fi rst time and represents the fi rst record of the tribe Gyponini Stål, 1870 (Hemiptera: Cicadellidae: Iassinae: Gyponini) for the Palearctic Region. Specimens were collected in southern Switzerland (Ticino) and two regions of northern Italy (Lombardy and Veneto) in 2015–2019. The preferred host plant in these areas appears to be Cornus sanguinea L. Phylogenetic analysis of the COI barcode sequences grouped one of the European specimens with three individuals of G. (G.) mali from Ontario, Canada. Morphological study indicated that the male genitalia of the European population are intermediate between G. (G.) mali and G. (G.) extenda DeLong, 1942.

Sign in / Sign up

Export Citation Format

Share Document