Chakhao(delicious) rice landraces (Oryza sativaL.) of North-east India: collection, conservation and characterization of genetic diversity

2014 ◽  
Vol 12 (3) ◽  
pp. 264-272 ◽  
Author(s):  
Somnath Roy ◽  
A. Banerjee ◽  
A. Pattanayak ◽  
S. S. Roy ◽  
R. S. Rathi ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Cultural Values ◽  
Gene Diversity ◽  
North East India ◽  
North East ◽  
Rice Landraces ◽  
Genetic Diversity And Structure ◽  
Depth Analysis ◽  
High Gene

Rice landraces have been developed through artificial selection imposed by farmers during the long-term domestication process. Although the global rice diversity is well characterized, few studies have conducted an in-depth analysis of genetic diversity on a local scale. In India, there are many locally adapted non-Basmati aromatic rice landraces in which the pace of improvement is slow, despite their high economic values. The aromatic and quality rice landraces of Manipur, locally calledChakhao(delicious), are important, considering their high economic and cultural values. To conserve and encourage improvement of these landraces, we collectedChakhaoaccessions from eight districts of Manipur. The aim of the current study was to investigate the level of genetic diversity and structure of 37Chakhaolandraces based on genotyping with 47 microsatellite markers. The genetic diversity analysis revealed high gene diversity (0.673) within theChakhaopopulation, with values ranging from 0.303 (Poireiton) to 0.471 (mixedChakhao). TheChakhaorice accessions could be divided into six subgroups based on genetic structure analyses. The population structure derived from the STRUCTURE analysis largely correlated with the farmers' classification ofChakhaolandraces. The results of genetic diversity analyses and the indigenous knowledge of the names and use ofChakhaolandraces would facilitate the conservation and utilization of this unique genetic resource.

scholarly journals Genetic Diversity Analysis, Population Structure and Gene-flow Estimates among Citrus Macroptera Mont. Collections from Garo Hills, Meghalaya using SPAR Approach

2021 ◽  
Vol 4 (1) ◽  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Gene Diversity ◽  
Time Frame ◽  
Conservation Strategies ◽  
North East India ◽  
Information Index ◽  
North East ◽  
Garo Hills ◽  
Single Primer

North East India is extremely rich in natural resources and is a biodiversity hotspot. Many plant species, including Citrus are known to have originated from this region. Citus macroptera Mont. is a wild, endangered species which have been found to exist naturally in various parts of this region, including Meghalaya. To access the genetic variability among genotypes and their phylogeny, 30 genotypes of wild C. macroptera Mont. were collected from Garo Hills of Meghalaya. Single primer based DNA markers viz. RAPD, ISSR, DAMD were utilized to ascertain genetic diversity. The percentage polymorphic bands for RAPD, ISSR, DAMD were found to be 97.71%, 94.67% and 100% respectively. ISSR showed the highest values for both RP (7.67) and MI (5.03) highlighting its efficacy in determining genetic variations. A concatenated approach, Single Primer Amplification Reaction (SPAR) was also followed to assess their genetic diversity. Dendogram generated from SPAR data showed that the South-West Garo Hills population is the most recently evolved amongst all others while West Garo Hills collections retain an ancestral position in the evolutionary time-frame. Population genetics parametres such as Gene flow (Nm) and the diversity among populations (GST) were found to be 1.9894 and 0.2009 respectively. Gene flow estimates (Nm>1) suggests appreciable gene flow in the populations. AMOVA data further supported this with high percentage of variations (92%) within populations whereas variations among populations were about 8% only. Shannon’s information index (I) values and Nei’s gene diversity (h) varied between 0.303-0.423and 0.201-0.285 respectively. The use of SPAR method yields a clear and concise picture of the underlying genetic variabilities, and a detailed and comprehensive data analysis will help conceive efficient and sustainable conservation strategies for this important plant.

Analysis of genetic diversity in Acorus calamus populations in South and North East India using ISSR markers

2012 ◽  
Vol 40 ◽  
pp. 156-161 ◽  
Author(s):  
V.K. Abdul Kareem ◽  
P.E. Rajasekharan ◽  
B.S. Ravish ◽  
S. Mini ◽  
Anuradha Sane ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Issr Markers ◽  
Acorus Calamus ◽  
North East India ◽  
North East

scholarly journals MODELING PRECIPITATION DEPENDENT FOREST RESILIENCE IN INDIA

2018 ◽  
Vol XLII-3 ◽  
pp. 263-266 ◽  
Author(s):  
P. Das ◽  
M. D. Behera ◽  
P. S. Roy
Keyword(s):  
Forest Cover ◽  
Vegetation Type ◽  
Annual Precipitation ◽  
Mean Annual Precipitation ◽  
High Tendency ◽  
North East India ◽  
North East ◽  
Forest Resilience ◽  
The Impact

The impact of long term climate change that imparts stress on forest could be perceived by studying the regime shift of forest ecosystem. With the change of significant precipitation, forest may go through density change around globe at different spatial and temporal scale. The 100 class high resolution (60 meter spatial resolution) Indian vegetation type map was used in this study recoded into four broad categories depending on phrenology as (i) forest, (ii) scrubland, (iii) grassland and (iv) treeless area. The percentage occupancy of forest, scrub, grass and treeless were observed as 19.9&amp;thinsp;%, 5.05&amp;thinsp;%, 1.89&amp;thinsp;% and 7.79&amp;thinsp;% respectively. Rest of the 65.37&amp;thinsp;% land area was occupied by the cropland, built-up, water body and snow covers. The majority forest cover were appended into a 5&amp;thinsp;km&amp;thinsp;&amp;times;&amp;thinsp;5&amp;thinsp;km grid, along with the mean annual precipitation taken from Bioclim data. The binary presence and absence of different vegetation categories in relates to the annual precipitation was analyzed to calculate their resilience expressed in probability values ranging from 0 to 1. Forest cover observed having resilience probability (Pr) &amp;lt;&amp;thinsp;0.3 in only 0.3&amp;thinsp;% (200&amp;thinsp;km<sup>2</sup>) of total forest cover in India, which was 4.3&amp;thinsp;% &amp;lt;&amp;thinsp;0.5&amp;thinsp;Pr. Majority of the scrubs and grass (64.92&amp;thinsp;% Pr&amp;thinsp;&amp;lt;&amp;thinsp;0.5) from North East India which were the shifting cultivation lands showing low resilience, having their high tendency to be transform to forest. These results have spatial explicitness to highlight the resilient and non-resilient distribution of forest, scrub and grass, and treeless areas in India.

Common Ancestry & Genetic Diversity of Few Indigenous Chilli Land Races of North East India

2018 ◽  
Vol 7 (6) ◽  
pp. 240-247
Author(s):  
Minakshi Bhattacharjee ◽  
Jutika Boro ◽  
Swati Singha ◽  
Hitesh Boro ◽  
Narbu Gengla ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Antioxidant Properties ◽  
Phytochemical Analysis ◽  
Common Ancestry ◽  
Oxidation Reactions ◽  
Potential Health ◽  
North East India ◽  
North East ◽  
Rapd Profile ◽  
Dpph Method

Since chilies contain high quantities of bioactive potential compounds, they are expected to possess large number of pharmacological values like antioxi-dants, antifungal, antibacterial, anti-inflammatory, antiulcer, diuretics activi-ties and is being employed for the treatment of different ailments in the indigenous system of medicine. The current study aimed at comparative evaluation of antioxidant properties, phytochemicals and RAPD assay from extracts of 6 different types of chilli found in the states of Assam and Arunachal Pradesh of North East India. The plant extracts were screened for phyto-chemicals, antioxidant analysis and RAPD profile. Phytochemical analysis shows abundant presence of alkaloids, phenols, flavonoids, saponins etc. The antioxidants activities of all the aqueous extracts were evaluated using the DPPH method. The antioxidant activity (% oxidation inhibition) ranged from as high as 86.56% in Bhut Jolokia (Capsicum assamicum) extracts to as low as 18.77% in Badami Jolokia (Capsicum annum) extract. Chilli samples studied possess potential health benefits by inhibiting many oxidation reactions caused by free radicals. Genetic diversity in 6 chilli genotypes was analyzed by RAPD markers of the fourteen random primers among which 11 were polymorphic. The phylogenetic tree showed common ancestry and the divergence among the chilli species. Based on the current study findings, it may be concluded the RAPD technology can be a useful tool in explaining the genetic diversity among chilli genotypes.

scholarly journals Diverse Rice Landraces of North-East India Enables the Identification of Novel Genetic Resources for Magnaporthe Resistance

2017 ◽  
Vol 8 ◽  
Author(s):  
Bangale Umakanth ◽  
Balija Vishalakshi ◽  
P. Sathish Kumar ◽  
S. J. S. Rama Devi ◽  
Vijay Pal Bhadana ◽  
...  
Keyword(s):  
Genetic Resources ◽  
North East India ◽  
North East ◽  
Rice Landraces

scholarly journals Analysis of Genetic Diversity and Population Structure of Some Bangladeshi Rice Landraces and HYV

2012 ◽  
Vol 4 (3) ◽  
pp. 757-767 ◽  
Author(s):  
M. M. Hassan ◽  
A. K. M. Shamsuddin ◽  
M. M. Islam ◽  
K. Khatun ◽  
J. Halder
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Distance ◽  
Gene Diversity ◽  
Allele Number ◽  
Rice Landraces ◽  
Efficient Management ◽  
Ssr Loci ◽  
Pattern Of Variation ◽  
Rice Improvement

Information on the patterns of genetic variation and population structure is essential for rational use and efficient management of germplasms. It helps in monitoring germplasm and can also be used to predict potential genetic gains. Therefore, in the present study genetic diversity of 59 rice genotypes were assessed using 8 simple sequence repeat (SSR) primers. By the DNA profiling, a total of 114 alleles were detected. Allele number per/locus ranged from 9 to 27, with an average of 14.25. Average polymorphism information content (PIC) value was 0.857 with lowest 0.767 to highest 0.857. Mean gene diversity over all SSR loci was 0.870 with a range from 0.792 to 0.948. Fst values for each locus varied from 0.071 to 0.262. Genetic distance between the variety pair ranged from 0.33 to 1.0. The lowest genetic distance was found between Rajashili and Kumragori (2). Cluster and principal coordinate analysis (PCoA) analysis revealed similar pattern of variation. Marker RM11300 was found most polymorphic and robust among the accessions and can be widely used for rice germplasm characterization. The exclusive variability and unique feature of germplasm found in this study can be a gateway for both domestic and global rice improvement.© 2012 JSR Publications. ISSN: 2070-0237 (Print); 2070-0245 (Online). All rights reserved.doi: http://dx.doi.org/10.3329/jsr.v4i3.10416 J. Sci. Res. 4 (3), 757-767 (2012)

Sign in / Sign up

Export Citation Format

Share Document