Broadband SERS Enhancement by DNA Origami Assembled Bimetallic Nanoantennas with Label-Free Single Protein Sensing

Author(s):  
Swati Tanwar ◽  
Vishaldeep Kaur ◽  
Gagandeep Kaur ◽  
Tapasi Sen
2021 ◽  
Author(s):  
Sonja Schmid ◽  
Pierre Stömmer ◽  
Hendrik Dietz ◽  
Cees Dekker

ABSTRACTMany strategies have been pursued to trap and monitor single proteins over time in order to detect the molecular mechanisms of these essential nanomachines. Single protein sensing with nanopores is particularly attractive because it allows label-free high-bandwidth detection based on ion currents. Here we present the Nanopore Electro-Osmotic trap (NEOtrap) that allows trapping and observing single proteins for hours with sub-millisecond time resolution. The NEOtrap is formed by docking a DNA-origami sphere onto a passivated solid-state nanopore, which seals off a nanocavity of a user-defined size and creates an electro-osmotic flow that traps nearby particles irrespective of their charge. We demonstrate the NEOtrap’s ability to sensitively distinguish proteins based on size and shape, and discriminate nucleotide-dependent protein conformations, as exemplified by the chaperone protein Hsp90. Given the experimental simplicity and capacity for label-free single-protein detection over the broad bio-relevant time range, the NEOtrap opens new avenues to study the molecular kinetics underlying protein function.


ACS Omega ◽  
2019 ◽  
Vol 4 (6) ◽  
pp. 11025-11031 ◽  
Author(s):  
Shuo Han ◽  
Wenyan Liu ◽  
Shuo Yang ◽  
Risheng Wang

The Analyst ◽  
2014 ◽  
Vol 139 (23) ◽  
pp. 6118-6121 ◽  
Author(s):  
Man Yi Ho ◽  
Sarah A. Goodchild ◽  
Pedro Estrela ◽  
Daping Chu ◽  
Piero Migliorato

Label-free protein sensing platform based on a simplified and standardized immobilization process with Azurin redox self-assembled monolayer is fabricated. A significant change in the electrochemical characteristics of the assay upon specific interaction with target molecules is observed.


2021 ◽  
Vol 8 (19) ◽  
pp. 2170121
Author(s):  
Kang Hyun Lee ◽  
Hanhwi Jang ◽  
Yoon Seok Kim ◽  
Chul‐Ho Lee ◽  
Seunghee H. Cho ◽  
...  

2020 ◽  
Author(s):  
Kosti Tapio ◽  
Amr Mostafa ◽  
Yuya Kanehira ◽  
Antonio Suma ◽  
Anushree Dutta ◽  
...  

Abstract DNA origami technology allows for the precise nanoscale assembly of chemical entities that give rise to new functional materials. We have created a versatile DNA Origami Nanofork Antenna (DONA) by assembling Au or Ag nanoparticle dimers with different gap sizes down to 1.17 nm, enabling signal enhancements in surface-enhanced Raman scattering (SERS) of up to 1011. This allows for single-molecule SERS measurements, which can even be performed with larger gap sizes to accommodate differently sized molecules, and at various excitation wavelengths. A general scheme is presented to place single analyte molecules into the SERS hot spots using the DNA origami structure exploiting covalent and non-covalent coupling schemes. By using Au and Ag dimers, single-molecule SERS measurements of three dyes and cytochrome c and horseradish peroxidase proteins are demonstrated even under non-resonant excitation conditions, thus providing long photostability during time-series measurement, and enabling unprecedented optical monitoring of single molecules.


2017 ◽  
Vol 8 (3) ◽  
pp. 1712 ◽  
Author(s):  
Mon-Juan Lee ◽  
Chung-Huan Chang ◽  
Wei Lee

Frequenz ◽  
2018 ◽  
Vol 72 (3-4) ◽  
pp. 113-122 ◽  
Author(s):  
Maximilian Bettenhausen ◽  
Friedhard Römer ◽  
Bernd Witzigmann ◽  
Julia Flesch ◽  
Rainer Kurre ◽  
...  

Abstract A Terahertz protein sensing concept based on subwavelength Ge resonators is presented. Ge bowtie resonators, compatible with CMOS fabrication technology, have been designed and characterized with a resonance frequency of 0.5 THz and calculated local intensity enhancement of 10.000. Selective biofunctionalization of Ge resonators on Si wafer was achieved in one step using lipoic acid-HaloTag ligand (LA-HTL) for biofunctionalization and passivation. The results lay the foundation for future investigation of protein tertiary structure and the dynamics of protein hydration shell in response to protein conformation changes.


Nano Letters ◽  
2011 ◽  
Vol 11 (2) ◽  
pp. 910-913 ◽  
Author(s):  
Hari K. K. Subramanian ◽  
Banani Chakraborty ◽  
Ruojie Sha ◽  
Nadrian C. Seeman

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