Calcium binding to calbindin D9k strongly affects backbone dynamics: measurements of exchange rates of individual amide protons using proton NMR

Biochemistry ◽  
1990 ◽  
Vol 29 (25) ◽  
pp. 5925-5934 ◽  
Author(s):  
Sara Linse ◽  
Olle Teleman ◽  
Torbjoern Drakenberg

2016 ◽  
Author(s):  
Liangzhong Lim ◽  
Linlin Miao ◽  
Jianxing Song

AbstractTwo major models, namely direct and indirect models, have been proposed for the protein chemical denaturation but it remains challenging to experimentally demonstrate and distinguish between them. Here, by use of CD and NMR spectroscopy, we succeeded in differentiating the effects on a small but well-folded protein WW4, of GdmCl and NaSCN at diluted concentrations (≥200 mM). Both denaturants up to 200 mM have no alternation of its average structure but do reduce its thermodynamic stability to different degrees. Despite acting as the stronger denaturant, GdmCl only weakly interacts with amide protons, while NaSCN shows extensive interactions with both hydrophobic side chains and amide protons. Although both denaturants show no significant perturbation on overall ps-ns backbone dynamics of WW4, GdmCl suppresses while NaSCN enhances its μs-ms backbone dynamics in a denaturant concentration dependent manner. Quantitative analysis reveals that although they dramatically raise exchange rates, GdmCl slightly increases while NaSCN reduces the population of the major conformational state. Our study represents the first report deciphering that GdmCl and NaSCN appear to destabilize a protein following two models respectively, which are characteristic of opposite μs-ms dynamics.



1987 ◽  
Vol 147 (3) ◽  
pp. 892-898 ◽  
Author(s):  
Stephen W. Fesik ◽  
Jay R. Luly ◽  
Herman H. Stein ◽  
Nwe BaMaung


2005 ◽  
Vol 14 (7) ◽  
pp. 1894-1901 ◽  
Author(s):  
Deepa V. Venkitaramani ◽  
D. Bruce Fulton ◽  
Amy H. Andreotti ◽  
Kristen M. Johansen ◽  
Jørgen Johansen


2007 ◽  
Vol 19 (1) ◽  
pp. 200
Author(s):  
G.-S. Lee ◽  
M.-H. Kim ◽  
S.-H. Hyun ◽  
E.-B. Jeung

Implantation in mammalian species is a complex process that involves embryo apposition and attachment to the apical surface of the uterine epithelium. This process involves a variant of molecules that are not unique in themselves but play unique roles in the process of implantation. Among them, the epidermal growth factor (EGF) family, the cytokines, cell adhesion molecules, and calcium-binding proteins appear to be important in embryonic attachment. Amphireguline (Areg), its receptor (EGFR), and calbindin-D9k (CaBP-9k) were highly expressed before implantation. Thus, in the present study, using rodent and porcine models, the expression levels of Areg, EGFR, and CaBP-9k gene were analyzed in the uterus during the estrous cycle and pregnancy by means of RT-PCR to elucidate their roles in implantation. Areg and CaBP-9k were significantly up-regulated at diestrus; however, these transcripts disappeared at proestrus in mice. In addition, EGFR mRNA was primarily observed at diestrus in mice. Although CaBP-9k and EGFR transcripts of rats increased at proestrus, no Areg mRNA was observed in this model. To clarify the regulator of the mouse Areg gene, immature mice were injected with sex steroid hormones. No transcripts of Areg were detected in these models, suggesting that mouse Areg may require other puberty factors. Porcine expressions of uterine Areg, EGFR, and CaBP-9k mRNA fluctuated during pregnancy (Days 12, 15, 30, 60, 90, and 110 of pregnancy). CaBP-9k transcripts were highly expressed on Day 12 and decreased on Days 15 to 90. On Day 110, CaBP-9k mRNA was expressed as well. Areg mRNA increased on Days 12 to 30, and decreased on Days 30 to 110. EGFR transcripts were detected on Day 12 and gradually disappeared till the end of pregnancy. Uterine Areg and CaBP-9k mRNAs were regulated by progesterone (P4) in the mouse model. Areg transcripts of porcine uteri appear to be expressed after implantation, but CaBP-9k mRNA was induced before embryo attachment. Taken together, these results indicate taht uterine Areg, EGFR, and CaBP-9k are differentially regulated during pregnancy in these species, and porcine CaBP-9k could act as an important factor in implantation. A further spatial expression of these genes will contribute to the understanding of their complex molecular actions involved in embryo attachment.



2012 ◽  
Vol 24 (1) ◽  
pp. 186
Author(s):  
T. H. Koo ◽  
E. B. Jeung

During pregnancy, the placenta represents the establishment of an intimate connection between mother and fetus that is specific to mammals. Calbindins [Calbindin-D9k (CaBP-9k) and -D28k (CaBP-28k)] are proteins possessing EF-hand motifs that have a high affinity for Ca2+ ions and play an important role in the regulation and buffering of Ca2+ in the various tissues. Many types of calcium channels, intracellular calcium binding proteins, Na+/Ca2+ exchangers (NCX) and transient receptor potential cation channels (TRPV) have been found in the placenta. In this study, the calcium channel in maternal-fetal Ca2+ transport was investigated using the phenotypes of wild-type, CaBP-9k, CaBP-28k and CaBP-9k/28k knockout (KO) mouse models. Expressions of calcium transport genes in 3 dissected sections of placenta (MP: maternal, CP: central, FP: fetal) were examined by real-time RT-PCR (RT-qPCR) and Western blot analysis at gestational Day 19 in these mice. The level of TRPV6 mRNA and protein was highest in the MP and CP of CaBP-28k KO mice and the FP of CaBP-9k KO mice compared with other sections of KO mice. The level of CaBP-9k was significantly induced in CaBP-28k KO mice in MP, CP and FP compared with in WT mice, which levels were elevated from maternal to fetal sections. The expression of CaBP-28k mRNA and protein was reduced in CaBP-9k KO mice compared with WT in the 3 sections of placenta. The expression of NCX1 mRNA and protein was higher in all KO mice than in WT in MP and NCX1 was highest in CaBP-28k KO mice in CP, but strong in CaBP-9k KO mice in FP compared with other strains. These results indicate that TRPV6 and NCX1 participate in transferring calcium ions between maternal and fetal compartments and alteration of CaBP-9k/28k is involved in the intracellular Ca2+ buffering system among WT and KO mice. These results taken together indicate that TRPV6 and CaBP-9k genes may play a role as a key element in controlling placental calcium transport during pregnancy.



Biochemistry ◽  
1990 ◽  
Vol 29 (24) ◽  
pp. 5752-5761 ◽  
Author(s):  
Nicholas J. Skelton ◽  
Sture Forsen ◽  
Walter J. Chazin


ChemInform ◽  
1987 ◽  
Vol 18 (32) ◽  
Author(s):  
T. L. FOX ◽  
P. A. TIPTON ◽  
W. W. CLELAND ◽  
A. S. MILDVAN


Endocrinology ◽  
1988 ◽  
Vol 122 (3) ◽  
pp. 1067-1073 ◽  
Author(s):  
MARK F. SEIFERT ◽  
RICHARD W. GRAY ◽  
M. ELIZABETH BRUNS




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