scholarly journals Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism

Cell Research ◽  
2010 ◽  
Vol 20 (10) ◽  
pp. 1096-1108 ◽  
Author(s):  
Wei Zhao ◽  
Yi Zhong ◽  
Hua Yuan ◽  
Jin Wang ◽  
Huajun Zheng ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Amycolatopsis Mediterranei ◽  
Genetic Characteristics ◽  
Rifamycin Sv

scholarly journals Complete genome sequence and comparative genomics of the golden pompano (Trachinotus ovatus) pathogen, Vibrio harveyi strain QT520

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e4127 ◽  
Author(s):  
Zhigang Tu ◽  
Hongyue Li ◽  
Xiang Zhang ◽  
Yun Sun ◽  
Yongcan Zhou
Keyword(s):  
Virulence Factors ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Vibrio Harveyi ◽  
Virulent Strain ◽  
Gc Content ◽  
Halophilic Bacterium ◽  
Secretion Systems ◽  
Genetic Characteristics

Vibrio harveyi is a Gram-negative, halophilic bacterium that is an opportunistic pathogen of commercially farmed marine vertebrate species. To understand the pathogenicity of this species, the genome of V. harveyi QT520 was analyzed and compared to that of other strains. The results showed the genome of QT520 has two unique circular chromosomes and three endogenous plasmids, totaling 6,070,846 bp with a 45% GC content, 5,701 predicted ORFs, 134 tRNAs and 37 rRNAs. Common virulence factors, including ACF, IlpA, OmpU, Flagellin, Cya, Hemolysin and MARTX, were detected in the genome, which are likely responsible for the virulence of QT520. The results of genomes comparisons with strains ATCC 33843 (392 (MAV)) and ATCC 43516 showed that greater numbers genes associated with types I, II, III, IV and VI secretion systems were detected in QT520 than in other strains, suggesting that QT520 is a highly virulent strain. In addition, three plasmids were only observed in the complete genome sequence of strain QT520. In plasmid p1 of QT520, specific virulence factors (cyaB, hlyB and rtxA) were identified, suggesting that the pathogenicity of this strain is plasmid-associated. Phylogenetic analysis of 12 complete Vibrio sp. genomes using ANI values, core genes and MLST revealed that QT520 was most closely related to ATCC 33843 (392 (MAV)) and ATCC 43516, suggesting that QT520 belongs to the species V. harveyi. This report is the first to describe the complete genome sequence of a V. harveyi strain isolated from an outbreak in a fish species in China. In addition, to the best of our knowledge, this report is the first to compare the V. harveyi genomes of several strains. The results of this study will expand our understanding of the genome, genetic characteristics, and virulence factors of V. harveyi, setting the stage for studies of pathogenesis, diagnostics, and disease prevention.

scholarly journals Complete Genome Sequence of Feline Calicivirus Strain GX01-2013 Isolated from Household Cats in Guangxi, Southern China

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Ping He ◽  
Huabo Zhou ◽  
Weifeng Zhao ◽  
Jianqiao He ◽  
Ruikai Li ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mdck Cells ◽  
Southern China ◽  
Feline Calicivirus ◽  
Genetic Characteristics

Here, we report the complete genome of a feline calicivirus (FCV) originating from household cats in Guangxi, southern China, in September 2013. To understand its genetic characteristics, we isolated FCV strain GX01-2013 from MDCK cells and determined its complete genome sequence.

scholarly journals Complete Genome Sequence of a Chemolithoautotrophic Iron-Oxidizing Bacterium, Acidithiobacillus ferrooxidans Strain NFP31, Isolated from Volcanic Ash Deposits on Miyake-Jima, Japan

2022 ◽  
Author(s):  
Tatsuhiro Kato ◽  
Yong Guo ◽  
Reiko Fujimura ◽  
Takamichi Nakamura ◽  
Tomoyasu Nishizawa ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Complete Genome ◽  
Volcanic Ash ◽  
Pyroclastic Deposits ◽  
Genetic Characteristics ◽  
Content Type ◽  
Volcanic Deposits

The genome sequence of Acidithiobacillus ferrooxidans strain NFP31, which is a chemolithoautotrophic iron-oxidizing bacterium that inhabits acidified volcanic deposits on Mount Oyama, Miyake Island (Miyake-jima), Japan, was determined to identify the genetic characteristics associated with pioneer microbes in newly placed pyroclastic deposits.

scholarly journals Complete Genome Sequence of Carp Edema Virus Isolated from Koi Carp

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Tohru Mekata ◽  
Yasuhiko Kawato ◽  
Takafumi Ito
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Disease ◽  
Sequence Information ◽  
Genetic Characteristics ◽  
Koi Carp

ABSTRACT Carp edema virus disease (CEVD), or koi sleepy disease, is caused by CEV. Here, we report the complete genome sequence of CEV strain FTI2020, isolated from koi carp. This sequence information has great potential for improving our understanding of the genetic characteristics of this piscine poxvirus.

scholarly journals Near-Complete Genome Sequence of a Newly Emerging Subgenotype of Atypical Porcine Pestivirus

2020 ◽  
Vol 9 (14) ◽  
Author(s):  
Xiaoru Wang ◽  
Yongsheng Xie ◽  
Dongsheng He ◽  
He Yan
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Guangdong Province ◽  
Newborn Piglet ◽  
Genetic Characteristics

This study reports the near-complete genome sequence of GD-CT4, a strain of a newly emerging subgenotype of atypical porcine pestivirus detected in a newborn piglet with congenital tremors in Guangdong Province, China. This sequence will improve the understanding of the epidemiology and genetic characteristics of atypical porcine pestivirus.

scholarly journals Complete Genome Sequence of a Novel Porcine Circovirus Type 3 Strain, PCV3/CN/Hubei-618/2016, Isolated from China

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Shengxian Fan ◽  
Xugang Ku ◽  
Fangzhou Chen ◽  
Ying Wang ◽  
Xuexiang Yu ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Porcine Circovirus Type ◽  
Porcine Circovirus ◽  
Genetic Characteristics ◽  
Type 3

ABSTRACT In October 2016, porcine circovirus type 3 (PCV3) was identified as a pathogen agent for pigs in the United States. Here, we report the genome sequence of a Chinese PCV3 strain, PCV3/CN/Hubei-618/2016. This will help us better understand the epidemiology and genetic characteristics of PCV3.

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