scholarly journals Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

2011 ◽  
Vol 29 (5) ◽  
pp. 415-420 ◽  
Author(s):  
Pelin Yilmaz ◽  
Renzo Kottmann ◽  
Dawn Field ◽  
Rob Knight ◽  
James R Cole ◽  
...  
2017 ◽  
Vol 35 (8) ◽  
pp. 725-731 ◽  
Author(s):  
Robert M Bowers ◽  
◽  
Nikos C Kyrpides ◽  
Ramunas Stepanauskas ◽  
Miranda Harmon-Smith ◽  
...  

AbstractWe present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.


2021 ◽  
Vol 13 (6) ◽  
pp. 18624-18630
Author(s):  
Ht Decemson ◽  
Vanlalsiammawii ◽  
Lal Biakzuala ◽  
Mathipi Vabeiryureilai ◽  
Fanai Malsawmdawngliana ◽  
...  

We present a new state record of Leptobrachella tamdil from Manipur State, northeastern India based on three individuals collected from Chakpi stream, Chandel District.  This record represents the range extension of the species as well as the easternmost distribution record.  We also provide additional morphological data as well as the first time genetic data for the species and inferred its phylogenetic position using mitochondrial 16S rRNA marker gene sequence.


Author(s):  
Shaima’a Dakhel AbdulHassa

Gairdia lamblia is one of parasites that cause intestinal problems within the human body, particularly private travelers and children. In this study a total of (100) diarrheal patients, 20 patients with Giardiasis were identified by fecal antigen. 9 out of 20(20%) of them were infected by fecal antigen, while 9(9%) of them were infected by using the screening general stool examination (GSE). The stool samples were collected from patient how vested the Medical City/ Baghdad and Tikrit teaching Hospital during the period from 1 st may 2018 to 1 February 2019. The results revealing a significant difference (p andlt; 0.05) between the two methods of detection for G. lamblia (Fecal antigen method and GSE). IT has been shown that out of 20 infected individuals 12(12%) were males and 8(8%) were females, indicating regarding no significant deference in the distribution of Giardiasis among genders. In regard the age, our results showed that highest infection rate 8(3.2%) was recorded in the age group (10-19) years, followed by the age group (20-2) years which was 692.4%). In this study five mutations were recorded at position (926, 1094, 1202and 1304), by using tpiA gene sequence method, and tpiB gene was on point mutation change (G254A), in the position (85) of triose phosphate isomease.


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