scholarly journals Transcriptional responses of Trichodesmium to natural inverse gradients of Fe and P availability

2021 ◽  
Author(s):  
E. Cerdan-Garcia ◽  
A. Baylay ◽  
D. Polyviou ◽  
E. M. S. Woodward ◽  
L. Wrightson ◽  
...  

AbstractThe filamentous diazotrophic cyanobacterium Trichodesmium is responsible for a significant fraction of marine di-nitrogen (N2) fixation. Growth and distribution of Trichodesmium and other diazotrophs in the vast oligotrophic subtropical gyres is influenced by iron (Fe) and phosphorus (P) availability, while reciprocally influencing the biogeochemistry of these nutrients. Here we use observations across natural inverse gradients in Fe and P in the North Atlantic subtropical gyre (NASG) to demonstrate how Trichodesmium acclimates in situ to resource availability. Transcriptomic analysis identified progressive upregulation of known iron-stress biomarker genes with decreasing Fe availability, and progressive upregulation of genes involved in the acquisition of diverse P sources with decreasing P availability, while genes involved in N2 fixation were upregulated at the intersection under moderate Fe and P availability. Enhanced N2 fixation within the Fe and P co-stressed transition region was also associated with a distinct, consistent metabolic profile, including the expression of alternative photosynthetic pathways that potentially facilitate ATP generation required for N2 fixation with reduced net oxygen production. The observed response of Trichodesmium to availability of both Fe and P supports suggestions that these biogeochemically significant organisms employ unique molecular, and thus physiological responses as adaptations to specifically exploit the Fe and P co-limited niche they construct.

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Martin Edwards ◽  
Pierre Hélaouët ◽  
Eric Goberville ◽  
Alistair Lindley ◽  
Geraint A. Tarling ◽  
...  

AbstractIn the North Atlantic, euphausiids (krill) form a major link between primary production and predators including commercially exploited fish. This basin is warming very rapidly, with species expected to shift northwards following their thermal tolerances. Here we show, however, that there has been a 50% decline in surface krill abundance over the last 60 years that occurred in situ, with no associated range shift. While we relate these changes to the warming climate, our study is the first to document an in situ squeeze on living space within this system. The warmer isotherms are shifting measurably northwards but cooler isotherms have remained relatively static, stalled by the subpolar fronts in the NW Atlantic. Consequently the two temperatures defining the core of krill distribution (7–13 °C) were 8° of latitude apart 60 years ago but are presently only 4° apart. Over the 60 year period the core latitudinal distribution of euphausiids has remained relatively stable so a ‘habitat squeeze’, with loss of 4° of latitude in living space, could explain the decline in krill. This highlights that, as the temperature warms, not all species can track isotherms and shift northward at the same rate with both losers and winners emerging under the ‘Atlantification’ of the sub-Arctic.


2019 ◽  
Author(s):  
Tanguy Szekely ◽  
Jérôme Gourrion ◽  
Sylvie Pouliquen ◽  
Gilles Reverdin

Abstract. We present the Copernicus in-situ ocean dataset of temperature and salinity (version V5.2). The ocean subsurface sampling varied widely from 1950 to 2017, as a result of changes in the instrument technology and development of in-situ observational networks (in particular, tropical moorings, ARGO program). The global ocean temperature data coverage on an annual basis grows thus from 10 % in 1950 (30 % for the North Atlantic basin) to 25 % in 2000 (60 % for the North Atlantic basin) and reaches a plateau exceeding 80 % (95 % for the North Atlantic Ocean) after the deployment of the ARGO program. The average depth reached by the profiles also increases from 1950 to 2017. The validation framework is presented, and an objective analysis-based method is developed to assess the quality of the dataset validation process. Analyses of the ocean variability are calculated without taking into account the data quality flags (raw dataset OA), with the near real time quality flags (NRT dataset OA) and with the delayed time mode quality flags (CORA dataset OA). The comparison of the objective analysis variability shows that the near real time dataset managed to detect and to flag most of the large measurement errors, reducing the analysis error bar compared to the raw dataset error bar. It also shows that the ocean variability of the delayed time mode validated dataset is almost exempt from the random error induced variability.


Zootaxa ◽  
2020 ◽  
Vol 4766 (2) ◽  
pp. 201-260 ◽  
Author(s):  
CHRISTOPHER L. MAH

Exploratory cruises by the NOAA Ship Okeanos Explorer have resulted in a substantial contribution in our understanding of deep-sea echinoderm biodiversity, biology, and ecology in the North Atlantic. This includes the description and in situ feeding observations of two, new corallivorous goniasterid species, Evoplosoma nizinskiae n. sp. and Sibogaster bathyheuretor n. sp. Significant in situ observations include a synchronous feeding event including multiple goniasterid asteroids and a cidaroid urchin on a large demosponge, providing new data for understanding echinoderm feeding behavior, including agonistic behavior, in deep-sea settings and new, in situ feeding observations for 28 deep-sea species including the myxasterid Pythonaster atlantidis, the korethrasterid Remaster palmatus and the poorly understood hippasterine goniasterids, Gilbertaster caribaea and Sthenaster emmae. 


2015 ◽  
Vol 28 (2) ◽  
pp. 819-837 ◽  
Author(s):  
Ole Johan Aarnes ◽  
Saleh Abdalla ◽  
Jean-Raymond Bidlot ◽  
Øyvind Breivik

Abstract Trends in marine wind speed and significant wave height are investigated using the global reanalysis ERA-Interim over the period 1979–2012, based on monthly-mean and monthly-maximum data. Besides the traditional reanalysis, the authors include trends obtained at different forecast range, available up to 10 days ahead. Any model biases that are corrected differently over time are likely to introduce spurious trends of variable magnitude. However, at increased forecast range the model tends to relax, being less affected by assimilation. Still, there is a trade-off between removing the impact of data assimilation at longer forecast range and getting a lower level of uncertainty in the predictions at shorter forecast range. Because of the sheer amount of assimilations made in ERA-Interim, directly and indirectly affecting the data, it is difficult, if not impossible, to distinguish effects imposed by all updates. Here, special emphasis is put on the introduction of wave altimeter data in August 1991, the only type of data directly affecting the wave field. From this, it is shown that areas of higher model bias introduce quite different trends depending on forecast range, most apparent in the North Atlantic and eastern tropical Pacific. Results are compared with 23 in situ measurements, Envisat altimeter winds, and two stand-alone ECMWF operational wave model (EC-WAM) runs with and without wave altimeter assimilation. Here, the 48-h forecast is suggested to be a better candidate for trend estimates of wave height, mainly due to the step change imposed by altimeter observations. Even though wind speed seems less affected by undesirable step changes, the authors believe that the 24–48-h forecast more effectively filters out any unwanted effects.


1997 ◽  
Vol 102 (D9) ◽  
pp. 10739-10750 ◽  
Author(s):  
H. Schlager ◽  
P. Konopka ◽  
P. Schulte ◽  
U. Schumann ◽  
H. Ziereis ◽  
...  

2009 ◽  
Vol 66 (7) ◽  
pp. 1467-1479 ◽  
Author(s):  
Sarah L. Hughes ◽  
N. Penny Holliday ◽  
Eugene Colbourne ◽  
Vladimir Ozhigin ◽  
Hedinn Valdimarsson ◽  
...  

Abstract Hughes, S. L., Holliday, N. P., Colbourne, E., Ozhigin, V., Valdimarsson, H., Østerhus, S., and Wiltshire, K. 2009. Comparison of in situ time-series of temperature with gridded sea surface temperature datasets in the North Atlantic. – ICES Journal of Marine Science, 66: 1467–1479. Analysis of the effects of climate variability and climate change on the marine ecosystem is difficult in regions where long-term observations of ocean temperature are sparse or unavailable. Gridded sea surface temperature (SST) products, based on a combination of satellite and in situ observations, can be used to examine variability and long-term trends because they provide better spatial coverage than the limited sets of long in situ time-series. SST data from three gridded products (Reynolds/NCEP OISST.v2., Reynolds ERSST.v3, and the Hadley Centre HadISST1) are compared with long time-series of in situ measurements from ICES standard sections in the North Atlantic and Nordic Seas. The variability and trends derived from the two data sources are examined, and the usefulness of the products as a proxy for subsurface conditions is discussed.


2008 ◽  
Vol 65 (3) ◽  
pp. 433-442 ◽  
Author(s):  
Lars Stemmann ◽  
Marsh Youngbluth ◽  
Kevin Robert ◽  
Aino Hosia ◽  
Marc Picheral ◽  
...  

Abstract Stemmann, L., Youngbluth, M., Robert, K., Hosia, A., Picheral, M., Paterson, H., Ibanez, F., Guidi, L., Lombard, F., and Gorsky, G. 2008. Global zoogeography of fragile macrozooplankton in the upper 100–1000 m inferred from the underwater video profiler. – ICES Journal of Marine Science, 65: 433–442. Mesopelagic gelatinous zooplankton fauna are insufficiently known because of inappropriate and infrequent sampling, but may have important trophic roles. In situ imaging systems and undersea vehicles have been used to investigate their diversity, distribution, and abundance. The use of different platforms, however, restricts the comparison of data from different regions. Starting in 2001, the underwater video profiler (UVP) was deployed during 12 cruises in six oceanic regimes (Mediterranean Sea, North Atlantic shelves, Mid-Atlantic Ridge, tropical Pacific Ocean, eastern Indian Ocean, and Subantarctic Ocean) to determine the vertical distribution of organisms in the upper 1000 m. Nine oceanic regions were identified based on the hydrological properties of the water column. They correspond to nine of the biogeochemical provinces defined by Longhurst. In all, 21 morphotypes were recognized: sarcodines (eight groups), ctenophores (two groups), siphonophores, medusae (five groups), crustaceans (one group), chaetognaths, appendicularians, salps, and fish. The similarity in the community assemblages of zooplankton in the 100–1000 m layer was significantly greater within regions than between regions, in most cases. The regions with comparable composition were located in the North Atlantic with adjacent water masses, suggesting that the assemblages were either mixed by advective transport or that environmental conditions were similar in mesopelagic layers. The data suggest that the spatial structuring of mesopelagic macrozooplankton occurs on large scales (e.g. basin scales) but not necessarily on smaller scales (e.g. oceanic front).


Sign in / Sign up

Export Citation Format

Share Document