scholarly journals Elucidating the constitutive relationship of calcium–silicate–hydrate gel using high throughput reactive molecular simulations and machine learning

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Gideon A. Lyngdoh ◽  
Hewenxuan Li ◽  
Mohd Zaki ◽  
N. M. Anoop Krishnan ◽  
Sumanta Das

AbstractPrediction of material behavior using machine learning (ML) requires consistent, accurate, and, representative large data for training. However, such consistent and reliable experimental datasets are not always available for materials. To address this challenge, we synergistically integrate ML with high-throughput reactive molecular dynamics (MD) simulations to elucidate the constitutive relationship of calcium–silicate–hydrate (C–S–H) gel—the primary binding phase in concrete formed via the hydration of ordinary portland cement. Specifically, a highly consistent dataset on the nine elastic constants of more than 300 compositions of C–S–H gel is developed using high-throughput reactive simulations. From a comparative analysis of various ML algorithms including neural networks (NN) and Gaussian process (GP), we observe that NN provides excellent predictions. To interpret the predicted results from NN, we employ SHapley Additive exPlanations (SHAP), which reveals that the influence of silicate network on all the elastic constants of C–S–H is significantly higher than that of water and CaO content. Additionally, the water content is found to have a more prominent influence on the shear components than the normal components along the direction of the interlayer spaces within C–S–H. This result suggests that the in-plane elastic response is controlled by water molecules whereas the transverse response is mainly governed by the silicate network. Overall, by seamlessly integrating MD simulations with ML, this paper can be used as a starting point toward accelerated optimization of C–S–H nanostructures to design efficient cementitious binders with targeted properties.

Materials ◽  
2019 ◽  
Vol 12 (17) ◽  
pp. 2837 ◽  
Author(s):  
Jikai Zhou ◽  
Yuanzhi Liang

To study the effect of water on the dynamic mechanical properties of calcium silicate hydrate (C–S–H) at the atomic scale, the molecular dynamics simulations were performed in uniaxial tension with different strain rates for C–S–H with a degree of saturation from 0% to 100%. Our calculations demonstrate that the dynamic tensile mechanical properties of C–S–H decrease with increasing water content and increase with increasing strain rates. With an increase in the degree of saturation, the strain rate sensitivity of C–S–H tends to increase. According to Morse potential function, the tensile stress-strain relationship curves of C–S–H are decomposed and fitted, and the dynamic tensile constitutive relationship of C–S–H considering the effect of water content is proposed. This reveals the strain rate effect of the cementitious materials with different water content from molecular insights, and the dynamic constitutive relationship obtained in this paper is necessary to the modelling of cementitious materials at the meso-scale.


Materials ◽  
2021 ◽  
Vol 14 (16) ◽  
pp. 4406
Author(s):  
Bei Hu ◽  
Wenke Huang ◽  
Jinlou Yu ◽  
Zhicheng Xiao ◽  
Kuanghuai Wu

The interface between an asphalt binder and a calcium silicate hydrate (C-S-H) gel is a weak point of semi-flexible pavement material. In this study, the adhesion performance of asphalt-C-S-H gel interface in semi-flexible pavements at a molecular scale has been investigated. Molecular dynamics (MD) simulations were applied to establish three asphalt binders: 70# asphalt binder (the penetration is 70 mm), PG76-22 modified asphalt binder (a kind of asphalt binder that can adapt to the highest temperature of 76 °C and the lowest temperature of −22 °C), and S-HV asphalt binder (super high viscosity). The effects of different temperatures and SBS modifier contents on interfacial adhesion were explored. The obtained results showed that temperature variations had little effect on the adhesion work of the asphalt-C-S-H gel interface. It was also found that by increasing the content of SBS modifier, the adhesion work of the asphalt-C-S-H gel interface was increased. The molecular weight of each component was found to be an important factor affecting its molecular diffusion rate. The addition of SBS modifier could regulate the adsorption of aromatics by C-S-H gel in the four components of asphalt binder and improve the adsorption of resins by C-S-H gel.


Author(s):  
Xabier Rodríguez-Martínez ◽  
Enrique Pascual-San-José ◽  
Mariano Campoy-Quiles

This review article presents the state-of-the-art in high-throughput computational and experimental screening routines with application in organic solar cells, including materials discovery, device optimization and machine-learning algorithms.


2020 ◽  
Vol 79 (Suppl 1) ◽  
pp. 897.2-897
Author(s):  
M. Maurits ◽  
T. Huizinga ◽  
M. Reinders ◽  
S. Raychaudhuri ◽  
E. Karlson ◽  
...  

Background:Heterogeneity in disease populations complicates discovery of risk factors. To identify risk factors for subpopulations of diseases, we need analytical methods that can deal with unidentified disease subgroups.Objectives:Inspired by successful approaches from the Big Data field, we developed a high-throughput approach to identify subpopulations within patients with heterogeneous, complex diseases using the wealth of information available in Electronic Medical Records (EMRs).Methods:We extracted longitudinal healthcare-interaction records coded by 1,853 PheCodes[1] of the 64,819 patients from the Boston’s Partners-Biobank. Through dimensionality reduction using t-SNE[2] we created a 2D embedding of 32,424 of these patients (set A). We then identified distinct clusters post-t-SNE using DBscan[3] and visualized the relative importance of individual PheCodes within them using specialized spectrographs. We replicated this procedure in the remaining 32,395 records (set B).Results:Summary statistics of both sets were comparable (Table 1).Table 1.Summary statistics of the total Partners Biobank dataset and the 2 partitions.Set-Aset-BTotalEntries12,200,31112,177,13124,377,442Patients32,42432,39564,819Patientyears369,546.33368,597.92738,144.2unique ICD codes25,05624,95326,305unique Phecodes1,8511,8531,853We found 284 clusters in set A and 295 in set B, of which 63.4% from set A could be mapped to a cluster in set B with a median (range) correlation of 0.24 (0.03 – 0.58).Clusters represented similar yet distinct clinical phenotypes; e.g. patients diagnosed with “other headache syndrome” were separated into four distinct clusters characterized by migraines, neurofibromatosis, epilepsy or brain cancer, all resulting in patients presenting with headaches (Fig. 1 & 2). Though EMR databases tend to be noisy, our method was also able to differentiate misclassification from true cases; SLE patients with RA codes clustered separately from true RA cases.Figure 1.Two dimensional representation of Set A generated using dimensionality reduction (tSNE) and clustering (DBScan).Figure 2.Phenotype Spectrographs (PheSpecs) of four clusters characterized by “Other headache syndromes”, driven by codes relating to migraine, epilepsy, neurofibromatosis or brain cancer.Conclusion:We have shown that EMR data can be used to identify and visualize latent structure in patient categorizations, using an approach based on dimension reduction and clustering machine learning techniques. Our method can identify misclassified patients as well as separate patients with similar problems into subsets with different associated medical problems. Our approach adds a new and powerful tool to aid in the discovery of novel risk factors in complex, heterogeneous diseases.References:[1] Denny, J.C. et al. Bioinformatics (2010)[2]van der Maaten et al. Journal of Machine Learning Research (2008)[3] Ester, M. et al. Proceedings of the Second International Conference on Knowledge Discovery and Data Mining. (1996)Disclosure of Interests:Marc Maurits: None declared, Thomas Huizinga Grant/research support from: Ablynx, Bristol-Myers Squibb, Roche, Sanofi, Consultant of: Ablynx, Bristol-Myers Squibb, Roche, Sanofi, Marcel Reinders: None declared, Soumya Raychaudhuri: None declared, Elizabeth Karlson: None declared, Erik van den Akker: None declared, Rachel Knevel: None declared


2021 ◽  
Vol 283 ◽  
pp. 122638
Author(s):  
Zhiyong Liu ◽  
Yuncheng Wang ◽  
Dong Xu ◽  
Chuyue Zang ◽  
Yunsheng Zhang ◽  
...  

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