scholarly journals QTL mapping for low temperature germination in rapeseed

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jifeng Zhu ◽  
Weirong Wang ◽  
Meiyan Jiang ◽  
Liyong Yang ◽  
Xirong Zhou
Keyword(s):  
Seed Germination ◽  
Low Temperature ◽  
Ssr Markers ◽  
Mapping Population ◽  
Susceptible Genotype ◽  
Seedling Mortality ◽  
Breeding Programs ◽  
Effect Function ◽  
High Effect ◽  
Genetic Mechanisms

AbstractRapeseed, a major oil crop in the world, is easily affected by low-temperature stress. A low temperature delays seed germination and increases seedling mortality, adversely affecting rapeseed growth and production. In the present study, a tolerant cultivar (Huyou21) was crossed with a susceptible genotype (3429) to develop a mapping population consisting of 574 F2 progenies and elucidate the genetic mechanisms of seed germination under low temperatures. Two quantitative trait loci (QTL) for low-temperature germination (LTG) were detected, one on chromosome A09 (named qLTGA9-1) and the other on chromosome C01 (named qLTGC1-1), using the QTL-seq approach and confirmed via linkage analysis in the mapping population. Further, qLTGA9-1 was mapped to a 341.86 kb interval between the SSR markers Nys9A212 and Nys9A215. In this region, 69 genes including six specific genes with moderate or high effect function variants were identified based on the Ningyou7 genome sequence. Meanwhile, qLTGC1-1 was mapped onto a 1.31 Mb interval between SSR markers Nys1C96 and Nys1C117. In this region, 133 genes including five specific genes with moderate effect function variants were identified. These specific genes within the two QTL could be used for further studies on cold tolerance and as targets in rapeseed breeding programs.

scholarly journals QTLs Detection for Low-Temperature Germination in Rapeseed by QTL-seq and Linkage Mapping Approach

2021 ◽  
Author(s):  
Jifeng Zhu ◽  
Weirong Wang ◽  
Meiyan Jiang ◽  
Liyong Yang ◽  
Xirong Zhou
Keyword(s):  
Seed Germination ◽  
Low Temperature ◽  
Ssr Markers ◽  
Genome Sequence ◽  
Linkage Mapping ◽  
Mapping Population ◽  
Seedling Mortality ◽  
Breeding Programs ◽  
Effect Function ◽  
Genetic Mechanisms

Abstract Rapeseed is a major oil crop in the world, which is easily affected by low-temperature stress. Low-temperature delays seed germination and increases seedling mortality that adversely affects rapeseed growth and production. To understand the genetic mechanisms of seed germination under low-temperature in rapeseed, we crossed a tolerant cultivar with a susceptible genotype to develop a mapping population of 574 F2 progenies. Two quantitative trait loci (QTLs) for low-temperature germination (LTG) were detected on chromosome A09 (named qLTGA9-1) and C01 (named qLTGC1-1) using QTL-seq method, and confirmed via linkage analysis in the mapping population. qLTGA9-1 was mapped to a 341.86-kb interval between SSR markers Nys9A212 and Nys9A215. In this region, 69 genes including six specific genes with moderate or high effect function variant were identified based on Ningyou7 genome sequence. qLTGC1-1 was mapped a 1.31-Mb interval between SSR markers Nys1C96 and Nys1C117. In this region, 133 genes including five specific genes with moderate effect function variant were identified based on Ningyou7 genome sequence. These specific genes within the two QTLs could be targets in rapeseed breeding programs and further studies for cold tolerance.

scholarly journals QTL Mapping of Seedling and Adult Plant Resistance to Septoria Tritici Blotch in Winter Wheat cv. Mandub (Triticum aestivum L.)

Agronomy ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1108
Author(s):  
Dominika Piaskowska ◽  
Urszula Piechota ◽  
Magdalena Radecka-Janusik ◽  
Paweł Czembor
Keyword(s):  
Mapping Population ◽  
Triticum Aestivum L ◽  
Seedling Stage ◽  
Septoria Tritici Blotch ◽  
Septoria Tritici ◽  
Adult Plant ◽  
Resistance Locus ◽  
Phenotypic Variance ◽  
Breeding Programs ◽  
Plant Stage

Septoria tritici blotch (STB) is one of the most devastating foliar diseases of wheat worldwide. Host resistance is the most economical and safest method of controlling the disease, and information on resistance loci is crucial for effective breeding for resistance programs. In this study we used a mapping population consisting of 126 doubled-haploid lines developed from a cross between the resistant cultivar Mandub and the susceptible cultivar Begra. Three monopycnidiospore isolates of Z. tritici with diverse pathogenicity were used to test the mapping population and parents’ STB resistance at the seedling stage (under a controlled environment) and adult plant stage (polytunnel). For both types of environments, the percentage leaf area covered by necrosis (NEC) and pycnidia (PYC) was determined. A linkage map comprising 5899 DArTSNP and silicoDArT markers was used for the quantitative trait loci (QTL) analysis. The analysis showed five resistance loci on chromosomes 1B, 2B and 5B, four of which were derived from cv. Mandub. The location of QTL detected in our study on chromosomes 1B and 5B may suggest a possible identity or close linkage with Stb2/Stb11/StbWW and Stb1 loci, respectively. QStb.ihar-2B.4 and QStb.ihar-2B.5 detected on chromosome 2B do not co-localize with any known Stb genes. QStb.ihar-2B.4 seems to be a new resistance locus with a moderate effect (explaining 29.3% of NEC and 31.4% of PYC), conferring resistance at the seedling stage. The phenotypic variance explained by QTL detected in cv. Mandub ranged from 11.9% to 70.0%, thus proving that it is a good STB resistance source and can potentially be utilized in breeding programs.

scholarly journals QTL analysis of seed germination traits in tobacco (Nicotiana tabacum L.)

2021 ◽  
Author(s):  
Monika Agacka-Mołdoch ◽  
Mian Abdur Rehman Arif ◽  
Ulrike Lohwasser ◽  
Teresa Doroszewska ◽  
Ramsey S. Lewis ◽  
...  
Keyword(s):  
Nicotiana Tabacum ◽  
Seed Germination ◽  
Doubled Haploid ◽  
Mapping Population ◽  
Area Under The Curve ◽  
Linkage Groups ◽  
Polygenic Control ◽  
Nicotiana Tabacum L ◽  
Controlled Deterioration ◽  
Germination Traits

AbstractGenetic mapping of seed germination traits has been performed with many plant species. In tobacco, however, investigations are rare. In the present study, a bi-parental mapping population consisting of 118 doubled haploid lines and derived from a cross between ‘Beinhart-1000’ and ‘Hicks’ was investigated. Four germination-related traits, total germination (TG), normal germination (NG), time to reach 50% of total germination (T50), and the area under the curve after 200 h of germination (AUC) were considered by examining seeds either untreated or after a moderate controlled deterioration (CD). Quantitative trait loci were found for all traits distributed on 11 out of the 24 linkage groups. It was demonstrated that, as in many other species, germination-related traits are very complex and under polygenic control.

Genetic diversity in accessions of lima bean (Phaseolus lunatus L.) determined from agro-morphological descriptors and SSR markers for use in breeding programs in Brazil

2021 ◽  
Author(s):  
Carolline de Jesús Pires ◽  
Marcones Ferreira Costa ◽  
Maria Imaculada Zucchi ◽  
Regina Lucia Ferreira-Gomes ◽  
José Baldin Pinheiro ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Lima Bean ◽  
Phaseolus Lunatus ◽  
Morphological Descriptors ◽  
Breeding Programs

Photosynthesis and antioxidant metabolism modulate the low-temperature resistance of seed germination in maize

2021 ◽  
Author(s):  
Aiju Meng ◽  
Daxing Wen ◽  
Chunqing Zhang
Keyword(s):  
Seed Germination ◽  
Low Temperature ◽  
Temperature Stress ◽  
Seedling Growth ◽  
Low Temperature Stress ◽  
Maize Seed ◽  
Down Regulation ◽  
Antioxidant Metabolism ◽  
Temperature Resistance ◽  
Low Temperature Resistance

Spring maize is usually subjected to low-temperature stress during seed germination, which retards seedling growth even if under a suitable temperature. However, the mechanism underlying maize seed germination under low-temperature stress modulating seedling growth after being transferred to normal temperature is still ambiguous. In this study, we used two maize inbred lines with different low-temperature resistance (SM and RM) to investigate the mechanism. The results showed that the SM line had higher lipid peroxidation and lower total antioxidant capacity and germination percentage than the RM line under low-temperature stress, which indicated that the SM line was more vulnerable to low-temperature stress. Further transcriptome analysis revealed that seed germination under low-temperature stress caused down-regulation of photosynthesis related gene ontology (GO) terms in two lines. Moreover, the SM line displayed down-regulation of ribosome and superoxide dismutase (SOD) related genes, whereas genes involved in SOD and vitamin B6 were up-regulated in the RM line. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that photosynthesis and antioxidant metabolism related pathways played important roles in seed germination in response to low-temperature stress, and the photosynthetic system displayed a higher damage degree in the SM line. Both qRT-PCR and physiological characteristics experiments showed similar results with transcriptome data. Taken together, we propose a model for maize seed germination in response to low-temperature stress.

scholarly journals Preventing thermoinhibition in a thermosensitive lettuce genotype by seed imbibition at low temperature

2003 ◽  
Vol 60 (3) ◽  
pp. 477-480 ◽  
Author(s):  
Warley Marcos Nascimento
Keyword(s):  
Seed Germination ◽  
Low Temperature ◽  
High Temperatures ◽  
Lactuca Sativa ◽  
Lettuce Seed ◽  
Temperature Dependent ◽  
Lettuce Seeds ◽  
Lactuca Sativa L ◽  
Lettuce Seed Germination ◽  
Dark Green

Lettuce (Lactuca sativa L.) seed germination is strongly temperature dependent and under high temperatures, germination of most of genotypes can be erratic or completely inhibited. Lettuce seeds of 'Dark Green Boston' (DGB) were incubated at temperatures ranging from 15° to 35°C at light and dark conditions. Other seeds were imbibed in dark at 20°; 25°; 30°; and 35°C for 8 and 16 hours and then transferred to 20 or 35°C, in dark. Seeds were also incubated at constant temperature of 20° and 35 °C, in the dark, as control. In another treatment, seeds were primed for 3 days at 15°C with constant light. DGB lettuce seeds required light to germinate adequately at temperatures above 25°C. Seeds incubated at 20°C had 97% germination, whereas seeds incubated at 35°C did not germinate. Seeds imbibed at 20°C for 8 and 16 hours had germination. At 35°C, seeds imbibed initially at 20°C for 8 and 16 hours, had 89 and 97% germination, respectively. Seeds imbibed at 25°C for 16 hours, germinated satisfactory at 35°C. High temperatures of imbibition led to no germination. Primed and non-primed seeds had 100% germination at 20°C. Primed seeds had 100% germination at 35°C, whereas non-primed seeds germinate only 4%. The first hours of imbibition are very critical for lettuce seed germination at high temperatures.

scholarly journals Estimation of interrelationships among some quality factors of jute seeds

2016 ◽  
Vol 25 (1) ◽  
pp. 9-17
Author(s):  
Md Al Mamun ◽  
S Shamsi ◽  
MA Bashar
Keyword(s):  
Seed Germination ◽  
Negative Correlation ◽  
Agar Plate ◽  
Curvularia Lunata ◽  
Rhizopus Stolonifer ◽  
Quality Factors ◽  
Seedling Mortality ◽  
Corchorus Capsularis ◽  
Paper Towel ◽  
Blotter Paper

The storage mycoflora associated with seeds of 21 accessions of Corchorus capsularis L. were isolated and identified. Blotter, Paper towel and Agar plate methods were used to isolate the fungi associated with seeds. A total of ten species of fungi viz. Aspergillus flavus, A. fumigatus, A. niger, A. terreus, Curvularia lunata, Colletotrichum corchori, Fusarium oxysporum, Eurotium sp., Penicillium sp. and Rhizopus stolonifer were isolated from the selected jute seeds. Aspergillus spp. and Colletotrichum corchori were predominant in most of the jute accessions. Accession No. A-3047 showed the highest fungal incidence and Accession Nos. A-3361, A-2734 and A-877 showed the lowest. Accession No. A-3361 showed the highest seed germination while Accession No. A-3309 showed the lowest. Mortality of seedling showed the highest in Accession No. A-3309 and the lowest in Accession No. A-3361. Physical purity of seed recorded the highest in Accession No. A- 3361 and the lowest in Accession No. A-3309. There were negative correlation between percentage of fungi and percentage of germination and between percentage of fungi and physical purity of seeds. Positive correlation was observed between percentage of fungi and seedling mortality and between purity of seed and germination of seed.Dhaka Univ. J. Biol. Sci. 25(1): 9-17, 2016

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