Insight into Enzymatic Degradation of Physically Crosslinked Hydrogels Anchored by Functionalized Carbon Nanofillers

2022 ◽  
Author(s):  
Adwaita SR Nair ◽  
Sudeepa Devi ◽  
Subhash Mandal ◽  
Upendra Kumar Tripathi ◽  
Debmalya Roy ◽  
...  

The effect of different geometries of functional carbon nanofillers has been studied to understand the nature of enzymatic degradation of physically crosslinked hydrogels. The noncovalent interactions between polymer and fillers...

Holzforschung ◽  
2006 ◽  
Vol 60 (5) ◽  
pp. 467-473 ◽  
Author(s):  
Axel Rußler ◽  
Antje Potthast ◽  
Thomas Rosenau ◽  
Thomas Lange ◽  
Bodo Saake ◽  
...  

Abstract Based on previous investigations on the substitution pattern of stabilized and fresh viscose, different viscoses were analyzed by gel permeation chromatography (GPC) with multiple-angle laser light scattering, refractive index (RI), and UV detection. Viscoses derivatized with N-methyl-N-phenyl-iodoacetanilide are stable over a long time and largely improve handling for analytical purposes. In addition, the derivatized xanthogenate groups exhibit UV absorbance that can be used to detect their distribution along the polymer molecule, once the polymer is dissolved. UV assay indicated that in technical viscoses the distribution of substituents is uniform. Enzymatic degradation with endoglucanases was followed by analysis of the degradation pattern by GPC. Even though the degree of substitution (DS) of xanthogenate groups ranged from γ=0.4 to 0.6, endoglucanases were able to slightly degrade the viscose. Ultrasonic degradation resulted in a narrow molecular weight distribution (MWD), notably without cleavage of substituents, and was also used to improve the solubility of the stabilized viscoses for further analysis. The techniques applied provide more insight into the xanthogenate distribution along the MWD. Remarkable differences in the degradation behavior of both viscose samples were observed.


2015 ◽  
Vol 112 (26) ◽  
pp. 7960-7965 ◽  
Author(s):  
Prakash B. Palde ◽  
Kate S. Carroll

Cysteine residues in cytosolic proteins are maintained in their reduced state, but can undergo oxidation owing to posttranslational modification during redox signaling or under conditions of oxidative stress. In large part, the reduction of oxidized protein cysteines is mediated by a small 12-kDa thiol oxidoreductase, thioredoxin (Trx). Trx provides reducing equivalents for central metabolic enzymes and is implicated in redox regulation of a wide number of target proteins, including transcription factors. Despite its importance in cellular redox homeostasis, the precise mechanism by which Trx recognizes target proteins, especially in the absence of any apparent signature binding sequence or motif, remains unknown. Knowledge of the forces associated with the molecular recognition that governs Trx–protein interactions is fundamental to our understanding of target specificity. To gain insight into Trx–target recognition, we have thermodynamically characterized the noncovalent interactions between Trx and target proteins before S-S reduction using isothermal titration calorimetry (ITC). Our findings indicate that Trx recognizes the oxidized form of its target proteins with exquisite selectivity, compared with their reduced counterparts. Furthermore, we show that recognition is dependent on the conformational restriction inherent to oxidized targets. Significantly, the thermodynamic signatures for multiple Trx targets reveal favorable entropic contributions as the major recognition force dictating these protein–protein interactions. Taken together, our data afford significant new insight into the molecular forces responsible for Trx–target recognition and should aid the design of new strategies for thiol oxidoreductase inhibition.


Author(s):  
Olga V. Moroz ◽  
Michelle Maranta ◽  
Tarana Shaghasi ◽  
Paul V. Harris ◽  
Keith S. Wilson ◽  
...  

The enzymatic degradation of plant cell-wall cellulose is central to many industrial processes, including second-generation biofuel production. Key players in this deconstruction are the fungal cellobiohydrolases (CBHs), notably those from family GH7 of the carbohydrate-active enzymes (CAZY) database, which are generally known as CBHI enzymes. Here, three-dimensional structures are reported of theAspergillus fumigatusCBHI Cel7A solved in uncomplexed and disaccharide-bound forms at resolutions of 1.8 and 1.5 Å, respectively. The product complex with a disaccharide in the +1 and +2 subsites adds to the growing three-dimensional insight into this family of industrially relevant biocatalysts.


This review considers articles on the formation of hydrogels based on chitosan as well as succinylated and quaternized chitosan derivatives. They are synthesized using low toxicity reagents, under ordinary conditions (low production costs). Chitosan derivatives are soluble in an extended range of pH values and characterized by mucoadhesiveness, bioavailability and biodegradability, which extends the potential of their medical applications. One of the most important properties of chitosan and its derivatives is the ability to form hydrogels. Depending on the nature of the bonds that occur during formation, hydrogels are divided into chemically or physically crosslinked, or a mixture of the two. Chemically crosslinked gels have covalent bonds, while physically crosslinked gels are formed by noncovalent interactions, for example, ionic. Mixed hydrogels have both types of crosslinking.


Author(s):  
Yuzhuang Fu ◽  
Yuwei Zhang ◽  
Fangfang Fan ◽  
Binju Wang ◽  
Zexing Cao

Enzymatic hydrolysis by phosphotriesterase (PTE) is one of the most effective ways to degrade organophosphorus pesticides, but the catalytic efficiency depends on structural features of substrates. Here the enzymatic degradation...


2017 ◽  
Vol 16 (07) ◽  
pp. 1750060
Author(s):  
A. Hosseinian ◽  
E. Vessally ◽  
M. Babazadeh ◽  
L. Edjlali ◽  
M. Es’haghi

The computational investigations on 1:1 complexes of the nitrogen trifluoride (NF[Formula: see text] species with the nitroxyl (HNO) species have been carried out, which reveal the existence of the nine complexes on the singlet potential energy surface (PES). The atoms in molecules (AIM) theory and the electron localization function (ELF) along with the identification of noncovalent interaction (NCI) regions and the investigation of electron transfer of all the obtained complexes have been carried out to provide suitable insight into the electronic and structural properties of these complexes. The calculated results reveal that the N-atom of the NF3 species and the O-atom of the HNO species have more key roles compared with the F-atom of the NF3 species and the N-atom of the HNO species in the obtained complexes.


RSC Advances ◽  
2016 ◽  
Vol 6 (22) ◽  
pp. 17896-17905 ◽  
Author(s):  
Jia-xiang Qin ◽  
Min Zhang ◽  
Chi Zhang ◽  
Cheng-tao Li ◽  
Yi Zhang ◽  
...  

In the present work, the difference of enzymatic degradation of PBS-based polyesters was investigated from the molecular level with molecular modeling.


Materials ◽  
2021 ◽  
Vol 14 (3) ◽  
pp. 503
Author(s):  
Liyuan Hou ◽  
Erica L.-W. Majumder

Polystyrene (PS) is one of the main polymer types of plastic wastes and is known to be resistant to biodegradation, resulting in PS waste persistence in the environment. Although previous studies have reported that some microorganisms can degrade PS, enzymes and mechanisms of microorganism PS biodegradation are still unknown. In this study, we summarized microbial species that have been identified to degrade PS. By screening the available genome information of microorganisms that have been reported to degrade PS for enzymes with functional potential to depolymerize PS, we predicted target PS-degrading enzymes. We found that cytochrome P4500s, alkane hydroxylases and monooxygenases ranked as the top potential enzyme classes that can degrade PS since they can break C–C bonds. Ring-hydroxylating dioxygenases may be able to break the side-chain of PS and oxidize the aromatic ring compounds generated from the decomposition of PS. These target enzymes were distributed in Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes, suggesting a broad potential for PS biodegradation in various earth environments and microbiomes. Our results provide insight into the enzymatic degradation of PS and suggestions for realizing the biodegradation of this recalcitrant plastic.


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